Hb_007926_060

Information

Type -
Description -
Location Contig7926: 84359-87271
Sequence    

Annotation

kegg
ID cmo:103486656
description ubiquitin-conjugating enzyme E2 variant 1C
nr
ID NP_001190073.1
description ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
swissprot
ID Q9SJ44
description Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1
trembl
ID A0A0A0LE42
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G778350 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin-conjugating enzyme e2 variant 1d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58423: 84489-88945
cDNA
(Sanger)
(ID:Location)		 003_H17.ab1: 84614-88902 , 011_J05.ab1: 84629-88945 , 014_A22.ab1: 84632-88908 , 020_I20.ab1: 84666-88932 , 021_I13.ab1: 84624-88906 , 023_E14.ab1: 84653-88906 , 024_D08.ab1: 84681-88944 , 028_N07.ab1: 84683-88945 , 046_G04.ab1: 84599-88906 , 047_F12.ab1: 84624-88906 , 048_M04.ab1: 84683-88929 , 050_D13.ab1: 84620-88929 , 050_J05.ab1: 84655-88904 , 051_G02.ab1: 84614-88927 , 052_I04.ab1: 84674-88946 , 053_M10.ab1: 84797-88944

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007926_060 0.0 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
2 Hb_004374_140 0.0791268614 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
3 Hb_004449_200 0.083210851 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
4 Hb_008544_010 0.083620708 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
5 Hb_006573_220 0.0874962452 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
6 Hb_001461_010 0.0915122633 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
7 Hb_001105_070 0.0927057047 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
8 Hb_004994_260 0.0932319813 - - Remorin, putative [Ricinus communis]
9 Hb_000023_340 0.0934871883 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
10 Hb_002631_020 0.0947305696 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
11 Hb_001687_040 0.0974393706 - - actin-depolymerizing factor [Hevea brasiliensis]
12 Hb_000975_110 0.0975339293 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
13 Hb_001191_090 0.0975416087 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
14 Hb_000963_180 0.0977487886 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
15 Hb_000905_200 0.0990172939 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
16 Hb_001153_060 0.0990267177 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010042_010 0.0990798906 - - Urease accessory protein ureD, putative [Ricinus communis]
18 Hb_001135_080 0.0996321095 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
19 Hb_029866_040 0.1024546813 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
20 Hb_000172_030 0.1042057093 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007926_060 Hb_007926_060 Hb_004374_140 Hb_004374_140 Hb_007926_060--Hb_004374_140 Hb_004449_200 Hb_004449_200 Hb_007926_060--Hb_004449_200 Hb_008544_010 Hb_008544_010 Hb_007926_060--Hb_008544_010 Hb_006573_220 Hb_006573_220 Hb_007926_060--Hb_006573_220 Hb_001461_010 Hb_001461_010 Hb_007926_060--Hb_001461_010 Hb_001105_070 Hb_001105_070 Hb_007926_060--Hb_001105_070 Hb_004374_140--Hb_008544_010 Hb_004374_140--Hb_001461_010 Hb_004336_050 Hb_004336_050 Hb_004374_140--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_004374_140--Hb_180301_010 Hb_002631_020 Hb_002631_020 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_000122_020 Hb_000122_020 Hb_004449_200--Hb_000122_020 Hb_004449_200--Hb_002631_020 Hb_001191_090 Hb_001191_090 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_004449_200--Hb_001461_010 Hb_008544_010--Hb_001461_010 Hb_000172_030 Hb_000172_030 Hb_008544_010--Hb_000172_030 Hb_008544_010--Hb_004336_050 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290 Hb_006573_220--Hb_001191_090 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_002097_060 Hb_002097_060 Hb_006573_220--Hb_002097_060 Hb_003376_030 Hb_003376_030 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_009773_020 Hb_009773_020 Hb_001105_070--Hb_009773_020 Hb_065525_020 Hb_065525_020 Hb_001105_070--Hb_065525_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.024 52.8633 49.4892 177.149 83.6829 173.944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
352.272 316.701 310.871 72.7409 43.4738

CAGE analysis