Hb_007933_020

Information

Type -
Description -
Location Contig7933: 18961-21988
Sequence    

Annotation

kegg
ID pmum:103335408
description uncharacterized protein At4g37920, chloroplastic
nr
ID XP_012079530.1
description PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
swissprot
ID Q84WN0
description Uncharacterized protein At4g37920, chloroplastic OS=Arabidopsis thaliana GN=At4g37920 PE=1 SV=2
trembl
ID A0A067KK20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12625 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein At4g37920, chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58444: 18917-22125 , PASA_asmbl_58445: 19172-21471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007933_020 0.0 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
2 Hb_000927_040 0.1962093935 - - -
3 Hb_001019_120 0.208815876 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
4 Hb_012384_050 0.213193419 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
5 Hb_000258_020 0.2194994763 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
6 Hb_029921_020 0.2296706769 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
7 Hb_002159_030 0.2299392083 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
8 Hb_000256_210 0.2303071998 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
9 Hb_036702_010 0.2350969698 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_007827_020 0.241732588 - - -
11 Hb_001916_120 0.2420897174 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
12 Hb_073212_010 0.2429961615 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
13 Hb_000179_200 0.2451107381 - - unnamed protein product [Vitis vinifera]
14 Hb_013016_020 0.2477225416 - - Disease resistance protein RPS2, putative [Ricinus communis]
15 Hb_005460_030 0.248698626 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
16 Hb_002188_090 0.2488598434 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
17 Hb_059464_010 0.2525556213 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001196_060 0.2566176552 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
19 Hb_001898_090 0.2599824874 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
20 Hb_000465_120 0.260038106 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]

Gene co-expression network

sample Hb_007933_020 Hb_007933_020 Hb_000927_040 Hb_000927_040 Hb_007933_020--Hb_000927_040 Hb_001019_120 Hb_001019_120 Hb_007933_020--Hb_001019_120 Hb_012384_050 Hb_012384_050 Hb_007933_020--Hb_012384_050 Hb_000258_020 Hb_000258_020 Hb_007933_020--Hb_000258_020 Hb_029921_020 Hb_029921_020 Hb_007933_020--Hb_029921_020 Hb_002159_030 Hb_002159_030 Hb_007933_020--Hb_002159_030 Hb_036702_010 Hb_036702_010 Hb_000927_040--Hb_036702_010 Hb_011953_030 Hb_011953_030 Hb_000927_040--Hb_011953_030 Hb_000927_040--Hb_000258_020 Hb_001916_120 Hb_001916_120 Hb_000927_040--Hb_001916_120 Hb_001677_050 Hb_001677_050 Hb_000927_040--Hb_001677_050 Hb_001019_120--Hb_036702_010 Hb_067776_020 Hb_067776_020 Hb_001019_120--Hb_067776_020 Hb_001019_120--Hb_002159_030 Hb_004324_240 Hb_004324_240 Hb_001019_120--Hb_004324_240 Hb_004987_070 Hb_004987_070 Hb_001019_120--Hb_004987_070 Hb_073212_010 Hb_073212_010 Hb_012384_050--Hb_073212_010 Hb_000365_260 Hb_000365_260 Hb_012384_050--Hb_000365_260 Hb_006615_100 Hb_006615_100 Hb_012384_050--Hb_006615_100 Hb_003064_030 Hb_003064_030 Hb_012384_050--Hb_003064_030 Hb_000815_140 Hb_000815_140 Hb_012384_050--Hb_000815_140 Hb_087221_010 Hb_087221_010 Hb_012384_050--Hb_087221_010 Hb_000258_020--Hb_001916_120 Hb_002234_220 Hb_002234_220 Hb_000258_020--Hb_002234_220 Hb_001277_410 Hb_001277_410 Hb_000258_020--Hb_001277_410 Hb_001138_010 Hb_001138_010 Hb_000258_020--Hb_001138_010 Hb_000028_640 Hb_000028_640 Hb_000258_020--Hb_000028_640 Hb_026206_020 Hb_026206_020 Hb_029921_020--Hb_026206_020 Hb_021420_010 Hb_021420_010 Hb_029921_020--Hb_021420_010 Hb_007810_100 Hb_007810_100 Hb_029921_020--Hb_007810_100 Hb_000179_200 Hb_000179_200 Hb_029921_020--Hb_000179_200 Hb_000566_100 Hb_000566_100 Hb_029921_020--Hb_000566_100 Hb_000100_130 Hb_000100_130 Hb_029921_020--Hb_000100_130 Hb_002159_040 Hb_002159_040 Hb_002159_030--Hb_002159_040 Hb_006882_010 Hb_006882_010 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.7713 5.39008 5.79888 2.91463 16.3493 27.2066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.361166 0.213108 5.03315 5.65904 18.4025

CAGE analysis