Hb_007933_030

Information

Type -
Description -
Location Contig7933: 24223-29897
Sequence    

Annotation

kegg
ID rcu:RCOM_0230330
description DNA binding protein, putative
nr
ID XP_012079527.1
description PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
swissprot
ID Q9ZQ47
description Glycine-rich domain-containing protein 1 OS=Arabidopsis thaliana GN=GRDP1 PE=2 SV=1
trembl
ID A0A067K7S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58447: 24372-30306 , PASA_asmbl_58448: 28630-28969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007933_030 0.0 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
2 Hb_000521_090 0.1202658936 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
3 Hb_001195_370 0.1227674635 - - -
4 Hb_001080_150 0.1237741318 - - PREDICTED: Niemann-Pick C1 protein-like [Jatropha curcas]
5 Hb_001793_030 0.1275699429 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
6 Hb_000300_680 0.1277406166 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
7 Hb_020400_020 0.1287405983 - - starch synthase isoform II [Manihot esculenta]
8 Hb_000084_140 0.1300819716 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
9 Hb_002681_080 0.1363991001 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
10 Hb_000329_080 0.1374828422 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
11 Hb_008616_040 0.1391929897 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
12 Hb_000352_220 0.1457712035 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
13 Hb_021409_190 0.1460807688 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
14 Hb_000117_030 0.1494853298 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
15 Hb_065525_070 0.1501827864 - - unnamed protein product [Homo sapiens]
16 Hb_030959_010 0.1513358484 - - cullin, putative [Ricinus communis]
17 Hb_001109_160 0.1514356932 - - DNA binding protein, putative [Ricinus communis]
18 Hb_001916_150 0.1523805009 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
19 Hb_007002_010 0.1526184307 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
20 Hb_004712_200 0.153837257 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]

Gene co-expression network

sample Hb_007933_030 Hb_007933_030 Hb_000521_090 Hb_000521_090 Hb_007933_030--Hb_000521_090 Hb_001195_370 Hb_001195_370 Hb_007933_030--Hb_001195_370 Hb_001080_150 Hb_001080_150 Hb_007933_030--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_007933_030--Hb_001793_030 Hb_000300_680 Hb_000300_680 Hb_007933_030--Hb_000300_680 Hb_020400_020 Hb_020400_020 Hb_007933_030--Hb_020400_020 Hb_000117_030 Hb_000117_030 Hb_000521_090--Hb_000117_030 Hb_002681_080 Hb_002681_080 Hb_000521_090--Hb_002681_080 Hb_004735_020 Hb_004735_020 Hb_000521_090--Hb_004735_020 Hb_000062_400 Hb_000062_400 Hb_000521_090--Hb_000062_400 Hb_005375_110 Hb_005375_110 Hb_000521_090--Hb_005375_110 Hb_030312_030 Hb_030312_030 Hb_001195_370--Hb_030312_030 Hb_000997_290 Hb_000997_290 Hb_001195_370--Hb_000997_290 Hb_000329_080 Hb_000329_080 Hb_001195_370--Hb_000329_080 Hb_000997_320 Hb_000997_320 Hb_001195_370--Hb_000997_320 Hb_000366_030 Hb_000366_030 Hb_001195_370--Hb_000366_030 Hb_001195_370--Hb_001080_150 Hb_062013_010 Hb_062013_010 Hb_001080_150--Hb_062013_010 Hb_001080_150--Hb_000329_080 Hb_000963_090 Hb_000963_090 Hb_001080_150--Hb_000963_090 Hb_078477_060 Hb_078477_060 Hb_001080_150--Hb_078477_060 Hb_168031_020 Hb_168031_020 Hb_001793_030--Hb_168031_020 Hb_001793_030--Hb_078477_060 Hb_001793_030--Hb_001080_150 Hb_001793_030--Hb_000329_080 Hb_000414_180 Hb_000414_180 Hb_001793_030--Hb_000414_180 Hb_000616_030 Hb_000616_030 Hb_000300_680--Hb_000616_030 Hb_031330_020 Hb_031330_020 Hb_000300_680--Hb_031330_020 Hb_000300_680--Hb_000329_080 Hb_001916_150 Hb_001916_150 Hb_000300_680--Hb_001916_150 Hb_000163_110 Hb_000163_110 Hb_000300_680--Hb_000163_110 Hb_000975_050 Hb_000975_050 Hb_000300_680--Hb_000975_050 Hb_000538_300 Hb_000538_300 Hb_020400_020--Hb_000538_300 Hb_000084_140 Hb_000084_140 Hb_020400_020--Hb_000084_140 Hb_004109_130 Hb_004109_130 Hb_020400_020--Hb_004109_130 Hb_065525_070 Hb_065525_070 Hb_020400_020--Hb_065525_070 Hb_001969_130 Hb_001969_130 Hb_020400_020--Hb_001969_130 Hb_001579_150 Hb_001579_150 Hb_020400_020--Hb_001579_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.70814 16.2357 14.3947 37.8975 6.46628 5.90579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71031 3.54233 5.65033 15.3849 98.7233

CAGE analysis