Hb_007943_020

Information

Type -
Description -
Location Contig7943: 37058-40819
Sequence    

Annotation

kegg
ID rcu:RCOM_1051610
description transcription factor, putative
nr
ID XP_002514268.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8S3D1
description Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2
trembl
ID B9RKM4
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1051610 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58456: 37343-37614 , PASA_asmbl_58457: 37634-40788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_020 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_000347_420 0.0914902985 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
3 Hb_003226_030 0.0935171543 - - sucrose synthase 5 [Hevea brasiliensis]
4 Hb_029260_010 0.0996870198 - - nitrate transporter, putative [Ricinus communis]
5 Hb_000020_030 0.1002651911 - - protein binding protein, putative [Ricinus communis]
6 Hb_002042_160 0.1107581146 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
7 Hb_138606_020 0.1111959255 - - Nitrate transporter2.5 [Theobroma cacao]
8 Hb_000994_100 0.1149242322 - - RALFL33, putative [Ricinus communis]
9 Hb_005357_020 0.115020781 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012743_020 0.1205727844 - - serine/threonine protein phosphatase, putative [Ricinus communis]
11 Hb_002420_010 0.1248537115 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_038777_010 0.1259156335 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
13 Hb_002814_050 0.1259794799 - - PREDICTED: sugar carrier protein A [Jatropha curcas]
14 Hb_172633_020 0.1276910851 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
15 Hb_000095_070 0.1278199839 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000210_140 0.129424338 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
17 Hb_002970_070 0.1299791053 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
18 Hb_000215_250 0.1313924889 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
19 Hb_002490_090 0.1333120217 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
20 Hb_000028_460 0.1342527764 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]

Gene co-expression network

sample Hb_007943_020 Hb_007943_020 Hb_000347_420 Hb_000347_420 Hb_007943_020--Hb_000347_420 Hb_003226_030 Hb_003226_030 Hb_007943_020--Hb_003226_030 Hb_029260_010 Hb_029260_010 Hb_007943_020--Hb_029260_010 Hb_000020_030 Hb_000020_030 Hb_007943_020--Hb_000020_030 Hb_002042_160 Hb_002042_160 Hb_007943_020--Hb_002042_160 Hb_138606_020 Hb_138606_020 Hb_007943_020--Hb_138606_020 Hb_000347_420--Hb_029260_010 Hb_004307_070 Hb_004307_070 Hb_000347_420--Hb_004307_070 Hb_000347_420--Hb_138606_020 Hb_000095_070 Hb_000095_070 Hb_000347_420--Hb_000095_070 Hb_000994_100 Hb_000994_100 Hb_000347_420--Hb_000994_100 Hb_012743_020 Hb_012743_020 Hb_003226_030--Hb_012743_020 Hb_002000_130 Hb_002000_130 Hb_003226_030--Hb_002000_130 Hb_001143_140 Hb_001143_140 Hb_003226_030--Hb_001143_140 Hb_005357_020 Hb_005357_020 Hb_003226_030--Hb_005357_020 Hb_008092_020 Hb_008092_020 Hb_003226_030--Hb_008092_020 Hb_029260_010--Hb_138606_020 Hb_029260_010--Hb_005357_020 Hb_029260_010--Hb_012743_020 Hb_000840_050 Hb_000840_050 Hb_029260_010--Hb_000840_050 Hb_002970_070 Hb_002970_070 Hb_000020_030--Hb_002970_070 Hb_000020_030--Hb_002042_160 Hb_022501_020 Hb_022501_020 Hb_000020_030--Hb_022501_020 Hb_000020_030--Hb_003226_030 Hb_000020_030--Hb_005357_020 Hb_002042_160--Hb_000994_100 Hb_002042_160--Hb_002970_070 Hb_172633_020 Hb_172633_020 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_055529_010 Hb_055529_010 Hb_002042_160--Hb_055529_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_138606_020--Hb_000840_050 Hb_009659_040 Hb_009659_040 Hb_138606_020--Hb_009659_040 Hb_138606_020--Hb_005357_020 Hb_138606_020--Hb_012743_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225045 22.0352 5.31361 23.883 0.262812 0.757152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0260006 0.020457 0.154601 30.2259 15.5875

CAGE analysis