Hb_007943_080

Information

Type -
Description -
Location Contig7943: 73962-76286
Sequence    

Annotation

kegg
ID rcu:RCOM_1052180
description cak1, putative (EC:2.7.11.22 2.7.11.14)
nr
ID XP_012076728.1
description PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
swissprot
ID O80345
description Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana GN=CDKF-1 PE=1 SV=1
trembl
ID A0A067KC27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07268 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin-dependent kinase f-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58462: 74552-74937 , PASA_asmbl_58463: 74134-76185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_080 0.0 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
2 Hb_000358_080 0.0688922623 - - Ribonuclease 3 [Gossypium arboreum]
3 Hb_000120_050 0.0782615574 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
4 Hb_007558_140 0.0855036852 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
5 Hb_003861_080 0.0861647 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
6 Hb_098993_010 0.0873419751 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
7 Hb_000134_350 0.0887383061 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
8 Hb_001635_100 0.0892684557 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
9 Hb_000088_010 0.0906258314 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_004046_010 0.0911436666 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
11 Hb_000490_030 0.0921247343 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
12 Hb_000619_080 0.0934860439 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
13 Hb_002027_120 0.0949482749 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
14 Hb_002890_340 0.0959126826 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
15 Hb_011918_080 0.0961918736 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
16 Hb_010710_010 0.0964546079 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
17 Hb_002307_100 0.0975604553 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
18 Hb_000413_180 0.1018938948 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
19 Hb_003297_030 0.1032654102 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
20 Hb_006091_030 0.104058811 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007943_080 Hb_007943_080 Hb_000358_080 Hb_000358_080 Hb_007943_080--Hb_000358_080 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_007943_080--Hb_007558_140 Hb_003861_080 Hb_003861_080 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010 Hb_000134_350 Hb_000134_350 Hb_007943_080--Hb_000134_350 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_000138_040 Hb_000138_040 Hb_000358_080--Hb_000138_040 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_153258_010 Hb_153258_010 Hb_000120_050--Hb_153258_010 Hb_000120_050--Hb_007558_140 Hb_000120_050--Hb_000358_080 Hb_010863_080 Hb_010863_080 Hb_000120_050--Hb_010863_080 Hb_003297_030 Hb_003297_030 Hb_000120_050--Hb_003297_030 Hb_011918_080 Hb_011918_080 Hb_007558_140--Hb_011918_080 Hb_002477_160 Hb_002477_160 Hb_007558_140--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_007558_140--Hb_002307_100 Hb_001085_170 Hb_001085_170 Hb_007558_140--Hb_001085_170 Hb_007558_140--Hb_153258_010 Hb_000997_210 Hb_000997_210 Hb_007558_140--Hb_000997_210 Hb_004046_010 Hb_004046_010 Hb_003861_080--Hb_004046_010 Hb_000110_160 Hb_000110_160 Hb_003861_080--Hb_000110_160 Hb_001635_100 Hb_001635_100 Hb_003861_080--Hb_001635_100 Hb_000805_090 Hb_000805_090 Hb_003861_080--Hb_000805_090 Hb_001157_030 Hb_001157_030 Hb_003861_080--Hb_001157_030 Hb_098993_010--Hb_003297_030 Hb_007575_040 Hb_007575_040 Hb_098993_010--Hb_007575_040 Hb_000025_480 Hb_000025_480 Hb_098993_010--Hb_000025_480 Hb_185467_020 Hb_185467_020 Hb_098993_010--Hb_185467_020 Hb_098993_010--Hb_007558_140 Hb_000134_350--Hb_000138_040 Hb_000134_350--Hb_000358_080 Hb_000134_350--Hb_003861_080 Hb_009382_020 Hb_009382_020 Hb_000134_350--Hb_009382_020 Hb_000661_170 Hb_000661_170 Hb_000134_350--Hb_000661_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.9943 28.3059 6.88309 11.6605 68.7221 68.1357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.0761 34.3988 98.3414 31.8925 12.5045

CAGE analysis