Hb_007943_090

Information

Type -
Description -
Location Contig7943: 80251-86218
Sequence    

Annotation

kegg
ID rcu:RCOM_1052190
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_012076727.1
description PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
swissprot
ID Q9FYG3
description Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1
trembl
ID B9RKN2
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1052190 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable plastidic glucose transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58465: 80217-86125 , PASA_asmbl_58466: 80670-82724 , PASA_asmbl_58467: 81614-82039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_090 0.0 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
2 Hb_000009_160 0.0619978733 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
3 Hb_000146_020 0.0628420884 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
4 Hb_008289_060 0.0640376679 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
5 Hb_004586_320 0.0669246906 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
6 Hb_001998_050 0.0707016306 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
7 Hb_003376_030 0.0740733112 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
8 Hb_000347_410 0.0762189174 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
9 Hb_012675_060 0.0768760244 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
10 Hb_007382_150 0.0783754157 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
11 Hb_001109_020 0.0784844541 - - conserved hypothetical protein [Ricinus communis]
12 Hb_016065_010 0.0801887912 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
13 Hb_000834_270 0.0806703917 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
14 Hb_002056_060 0.0811826683 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
15 Hb_029866_020 0.0815136938 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
16 Hb_012753_160 0.0815670535 - - ara4-interacting protein, putative [Ricinus communis]
17 Hb_000030_100 0.0821740656 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
18 Hb_000671_090 0.0843059358 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
19 Hb_005731_170 0.0845353589 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
20 Hb_021409_030 0.0847848981 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007943_090 Hb_007943_090 Hb_000009_160 Hb_000009_160 Hb_007943_090--Hb_000009_160 Hb_000146_020 Hb_000146_020 Hb_007943_090--Hb_000146_020 Hb_008289_060 Hb_008289_060 Hb_007943_090--Hb_008289_060 Hb_004586_320 Hb_004586_320 Hb_007943_090--Hb_004586_320 Hb_001998_050 Hb_001998_050 Hb_007943_090--Hb_001998_050 Hb_003376_030 Hb_003376_030 Hb_007943_090--Hb_003376_030 Hb_000671_090 Hb_000671_090 Hb_000009_160--Hb_000671_090 Hb_000205_270 Hb_000205_270 Hb_000009_160--Hb_000205_270 Hb_005431_010 Hb_005431_010 Hb_000009_160--Hb_005431_010 Hb_016065_010 Hb_016065_010 Hb_000009_160--Hb_016065_010 Hb_055062_030 Hb_055062_030 Hb_000009_160--Hb_055062_030 Hb_000347_410 Hb_000347_410 Hb_000146_020--Hb_000347_410 Hb_000834_270 Hb_000834_270 Hb_000146_020--Hb_000834_270 Hb_000146_020--Hb_003376_030 Hb_002027_210 Hb_002027_210 Hb_000146_020--Hb_002027_210 Hb_000146_020--Hb_008289_060 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_008289_060--Hb_055062_030 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_012675_060 Hb_012675_060 Hb_004586_320--Hb_012675_060 Hb_003656_070 Hb_003656_070 Hb_004586_320--Hb_003656_070 Hb_004586_320--Hb_001998_050 Hb_000574_480 Hb_000574_480 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010 Hb_000227_230 Hb_000227_230 Hb_001998_050--Hb_000227_230 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_001998_050--Hb_012675_060 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_002097_060 Hb_002097_060 Hb_003376_030--Hb_002097_060 Hb_003376_030--Hb_148200_010 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_003376_030--Hb_002027_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2321 13.5717 11.2514 11.7825 27.598 27.6985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.9739 69.5458 65.2413 21.4999 8.49091

CAGE analysis