Hb_007943_130

Information

Type -
Description -
Location Contig7943: 114246-122947
Sequence    

Annotation

kegg
ID rcu:RCOM_1052220
description 3-hydroxyacyl-CoA dehyrogenase, putative (EC:5.1.2.3)
nr
ID XP_002514279.1
description 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
swissprot
ID Q9ZPI6
description Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1
trembl
ID B9RKN5
description 3-hydroxyacyl-CoA dehyrogenase, putative OS=Ricinus communis GN=RCOM_1052220 PE=3 SV=1
Gene Ontology
ID GO:0005618
description peroxisomal fatty acid beta-oxidation multifunctional protein aim1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_130 0.0 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
2 Hb_001894_150 0.0722397134 - - nucleoredoxin, putative [Ricinus communis]
3 Hb_000123_210 0.0762520485 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
4 Hb_030116_020 0.0946340566 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
5 Hb_000206_250 0.0953055349 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
6 Hb_006642_040 0.0958882739 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
7 Hb_106371_010 0.1005357586 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_033834_060 0.1008435379 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
9 Hb_000700_140 0.1051232562 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
10 Hb_000252_170 0.1052446116 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
11 Hb_143629_110 0.1054197181 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
12 Hb_000627_230 0.1059209039 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
13 Hb_004429_100 0.1071181875 - - PREDICTED: asparagine synthetase domain-containing protein 1 [Jatropha curcas]
14 Hb_007101_170 0.1076467589 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
15 Hb_004994_220 0.1091454463 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
16 Hb_001143_160 0.1094623953 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
17 Hb_003090_080 0.1102092692 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
18 Hb_000193_190 0.1115606238 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
19 Hb_090804_010 0.1118458875 - - ATP-dependent RNA helicase, putative [Ricinus communis]
20 Hb_000398_120 0.1125728877 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like isoform X4 [Gossypium raimondii]

Gene co-expression network

sample Hb_007943_130 Hb_007943_130 Hb_001894_150 Hb_001894_150 Hb_007943_130--Hb_001894_150 Hb_000123_210 Hb_000123_210 Hb_007943_130--Hb_000123_210 Hb_030116_020 Hb_030116_020 Hb_007943_130--Hb_030116_020 Hb_000206_250 Hb_000206_250 Hb_007943_130--Hb_000206_250 Hb_006642_040 Hb_006642_040 Hb_007943_130--Hb_006642_040 Hb_106371_010 Hb_106371_010 Hb_007943_130--Hb_106371_010 Hb_001894_150--Hb_030116_020 Hb_001894_150--Hb_000123_210 Hb_007101_170 Hb_007101_170 Hb_001894_150--Hb_007101_170 Hb_001894_150--Hb_000206_250 Hb_001172_010 Hb_001172_010 Hb_001894_150--Hb_001172_010 Hb_001143_160 Hb_001143_160 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020 Hb_003747_010 Hb_003747_010 Hb_030116_020--Hb_003747_010 Hb_030116_020--Hb_001172_010 Hb_000700_140 Hb_000700_140 Hb_030116_020--Hb_000700_140 Hb_030116_020--Hb_000123_210 Hb_033834_060 Hb_033834_060 Hb_030116_020--Hb_033834_060 Hb_030116_020--Hb_106371_010 Hb_000206_250--Hb_000123_210 Hb_000206_250--Hb_007101_170 Hb_090804_010 Hb_090804_010 Hb_000206_250--Hb_090804_010 Hb_004994_220 Hb_004994_220 Hb_000206_250--Hb_004994_220 Hb_000206_250--Hb_001143_160 Hb_002131_020 Hb_002131_020 Hb_000206_250--Hb_002131_020 Hb_000497_110 Hb_000497_110 Hb_006642_040--Hb_000497_110 Hb_015175_020 Hb_015175_020 Hb_006642_040--Hb_015175_020 Hb_011671_180 Hb_011671_180 Hb_006642_040--Hb_011671_180 Hb_001009_170 Hb_001009_170 Hb_006642_040--Hb_001009_170 Hb_023001_060 Hb_023001_060 Hb_006642_040--Hb_023001_060 Hb_003090_080 Hb_003090_080 Hb_106371_010--Hb_003090_080 Hb_000160_040 Hb_000160_040 Hb_106371_010--Hb_000160_040 Hb_001790_020 Hb_001790_020 Hb_106371_010--Hb_001790_020 Hb_016898_010 Hb_016898_010 Hb_106371_010--Hb_016898_010 Hb_106371_010--Hb_033834_060 Hb_003952_150 Hb_003952_150 Hb_106371_010--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0719 6.4937 4.41459 7.65694 18.0973 15.5472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0639 7.97571 13.4593 21.3497 5.76921

CAGE analysis