Hb_007943_150

Information

Type -
Description -
Location Contig7943: 128615-135472
Sequence    

Annotation

kegg
ID rcu:RCOM_1052240
description multidrug resistance pump, putative
nr
ID XP_012076715.1
description PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
swissprot
ID Q66GI4
description Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1
trembl
ID A0A067KBU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07262 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58478: 128614-133035 , PASA_asmbl_58480: 133668-134586 , PASA_asmbl_58481: 133806-134586 , PASA_asmbl_58482: 134720-135332
cDNA
(Sanger)
(ID:Location)		 015_H11.ab1: 128616-129283

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_150 0.0 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
2 Hb_001434_020 0.0861588532 - - hypothetical protein RCOM_0841800 [Ricinus communis]
3 Hb_002392_020 0.0876313122 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
4 Hb_000496_130 0.0897975254 - - PREDICTED: fructokinase-1 [Jatropha curcas]
5 Hb_000265_070 0.0967276808 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
6 Hb_005588_100 0.1071155864 - - protein phosphatase, putative [Ricinus communis]
7 Hb_000696_190 0.1119602535 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Jatropha curcas]
8 Hb_000230_530 0.114127781 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003490_060 0.1152604825 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
10 Hb_000358_210 0.1167075822 - - oligosaccharyl transferase, putative [Ricinus communis]
11 Hb_002902_140 0.1202000945 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]
12 Hb_006816_010 0.1210637895 - - conserved hypothetical protein [Ricinus communis]
13 Hb_014497_060 0.1221537126 - - phosphofructokinase, putative [Ricinus communis]
14 Hb_001143_100 0.122481148 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
15 Hb_004710_020 0.1235219566 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
16 Hb_003490_050 0.1247306291 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
17 Hb_009524_030 0.1262473733 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
18 Hb_009296_020 0.1267859155 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
19 Hb_002232_490 0.1275423922 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
20 Hb_070624_010 0.1279913676 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_007943_150 Hb_007943_150 Hb_001434_020 Hb_001434_020 Hb_007943_150--Hb_001434_020 Hb_002392_020 Hb_002392_020 Hb_007943_150--Hb_002392_020 Hb_000496_130 Hb_000496_130 Hb_007943_150--Hb_000496_130 Hb_000265_070 Hb_000265_070 Hb_007943_150--Hb_000265_070 Hb_005588_100 Hb_005588_100 Hb_007943_150--Hb_005588_100 Hb_000696_190 Hb_000696_190 Hb_007943_150--Hb_000696_190 Hb_001677_100 Hb_001677_100 Hb_001434_020--Hb_001677_100 Hb_001434_020--Hb_002392_020 Hb_009296_020 Hb_009296_020 Hb_001434_020--Hb_009296_020 Hb_000358_210 Hb_000358_210 Hb_001434_020--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001434_020--Hb_070624_010 Hb_003490_060 Hb_003490_060 Hb_002392_020--Hb_003490_060 Hb_002392_020--Hb_000358_210 Hb_002284_100 Hb_002284_100 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_003355_010 Hb_003355_010 Hb_000496_130--Hb_003355_010 Hb_001143_100 Hb_001143_100 Hb_000496_130--Hb_001143_100 Hb_025194_090 Hb_025194_090 Hb_000496_130--Hb_025194_090 Hb_004710_020 Hb_004710_020 Hb_000496_130--Hb_004710_020 Hb_000510_190 Hb_000510_190 Hb_000496_130--Hb_000510_190 Hb_000265_070--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_000265_070--Hb_009524_030 Hb_000265_070--Hb_070624_010 Hb_000265_070--Hb_002392_020 Hb_000645_180 Hb_000645_180 Hb_000265_070--Hb_000645_180 Hb_005588_100--Hb_000496_130 Hb_001564_070 Hb_001564_070 Hb_005588_100--Hb_001564_070 Hb_002811_200 Hb_002811_200 Hb_005588_100--Hb_002811_200 Hb_005588_100--Hb_001434_020 Hb_000230_530 Hb_000230_530 Hb_005588_100--Hb_000230_530 Hb_000454_100 Hb_000454_100 Hb_000696_190--Hb_000454_100 Hb_000696_190--Hb_004710_020 Hb_000270_710 Hb_000270_710 Hb_000696_190--Hb_000270_710 Hb_000696_190--Hb_000265_070 Hb_002902_140 Hb_002902_140 Hb_000696_190--Hb_002902_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59755 3.42158 13.9032 8.40772 3.25182 4.64434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10703 1.59472 1.89544 13.7666 16.7628

CAGE analysis