Hb_007943_160

Information

Type -
Description -
Location Contig7943: 136545-141280
Sequence    

Annotation

kegg
ID rcu:RCOM_1052360
description aspartate aminotransferase, putative (EC:2.6.1.1)
nr
ID XP_012076713.1
description PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
swissprot
ID P28734
description Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1
trembl
ID A0A067KPI2
description Aspartate aminotransferase OS=Jatropha curcas GN=JCGZ_07260 PE=3 SV=1
Gene Ontology
ID GO:0004069
description aspartate cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58483: 136732-141453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_160 0.0 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
2 Hb_003226_120 0.148365271 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000011_290 0.1643591143 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
4 Hb_012545_090 0.1668279295 - - hypothetical protein JCGZ_04320 [Jatropha curcas]
5 Hb_006275_010 0.1725974218 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
6 Hb_004079_080 0.1942183447 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
7 Hb_039145_010 0.1945946248 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_000120_390 0.20152827 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
9 Hb_182680_010 0.2029183139 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
10 Hb_002539_020 0.2037012589 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
11 Hb_008226_070 0.2053420811 - - PREDICTED: expansin-A8 [Jatropha curcas]
12 Hb_006141_030 0.2068270338 - - -
13 Hb_004129_050 0.207776398 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
14 Hb_000227_040 0.2086372122 - - Stem-specific protein TSJT1, putative [Ricinus communis]
15 Hb_004462_010 0.2087339161 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
16 Hb_003098_080 0.2113439566 - - -
17 Hb_150360_020 0.2115939051 - - PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
18 Hb_138710_010 0.2129345713 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
19 Hb_127886_010 0.2134681224 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
20 Hb_000005_250 0.2160675028 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007943_160 Hb_007943_160 Hb_003226_120 Hb_003226_120 Hb_007943_160--Hb_003226_120 Hb_000011_290 Hb_000011_290 Hb_007943_160--Hb_000011_290 Hb_012545_090 Hb_012545_090 Hb_007943_160--Hb_012545_090 Hb_006275_010 Hb_006275_010 Hb_007943_160--Hb_006275_010 Hb_004079_080 Hb_004079_080 Hb_007943_160--Hb_004079_080 Hb_039145_010 Hb_039145_010 Hb_007943_160--Hb_039145_010 Hb_008226_070 Hb_008226_070 Hb_003226_120--Hb_008226_070 Hb_028872_110 Hb_028872_110 Hb_003226_120--Hb_028872_110 Hb_003226_120--Hb_004079_080 Hb_000159_120 Hb_000159_120 Hb_003226_120--Hb_000159_120 Hb_003906_170 Hb_003906_170 Hb_003226_120--Hb_003906_170 Hb_001699_200 Hb_001699_200 Hb_000011_290--Hb_001699_200 Hb_000011_290--Hb_004079_080 Hb_001971_060 Hb_001971_060 Hb_000011_290--Hb_001971_060 Hb_000061_090 Hb_000061_090 Hb_000011_290--Hb_000061_090 Hb_002539_020 Hb_002539_020 Hb_000011_290--Hb_002539_020 Hb_000227_040 Hb_000227_040 Hb_012545_090--Hb_000227_040 Hb_012545_090--Hb_008226_070 Hb_012760_040 Hb_012760_040 Hb_012545_090--Hb_012760_040 Hb_004129_050 Hb_004129_050 Hb_012545_090--Hb_004129_050 Hb_000702_060 Hb_000702_060 Hb_012545_090--Hb_000702_060 Hb_009732_020 Hb_009732_020 Hb_012545_090--Hb_009732_020 Hb_000056_220 Hb_000056_220 Hb_006275_010--Hb_000056_220 Hb_000915_070 Hb_000915_070 Hb_006275_010--Hb_000915_070 Hb_000120_390 Hb_000120_390 Hb_006275_010--Hb_000120_390 Hb_001206_090 Hb_001206_090 Hb_006275_010--Hb_001206_090 Hb_004976_050 Hb_004976_050 Hb_006275_010--Hb_004976_050 Hb_000621_020 Hb_000621_020 Hb_004079_080--Hb_000621_020 Hb_001214_090 Hb_001214_090 Hb_004079_080--Hb_001214_090 Hb_001623_160 Hb_001623_160 Hb_004079_080--Hb_001623_160 Hb_004079_080--Hb_001971_060 Hb_016522_010 Hb_016522_010 Hb_004079_080--Hb_016522_010 Hb_100147_010 Hb_100147_010 Hb_004079_080--Hb_100147_010 Hb_014894_010 Hb_014894_010 Hb_039145_010--Hb_014894_010 Hb_000417_320 Hb_000417_320 Hb_039145_010--Hb_000417_320 Hb_001246_030 Hb_001246_030 Hb_039145_010--Hb_001246_030 Hb_008864_090 Hb_008864_090 Hb_039145_010--Hb_008864_090 Hb_002005_100 Hb_002005_100 Hb_039145_010--Hb_002005_100 Hb_119494_010 Hb_119494_010 Hb_039145_010--Hb_119494_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63389 11.6756 10.1998 46.7607 10.5015 21.0314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1527 16.6023 24.0372 170.02 15.3179

CAGE analysis