Hb_007943_180

Information

Type -
Description -
Location Contig7943: 148303-152566
Sequence    

Annotation

kegg
ID rcu:RCOM_1052490
description hypothetical protein
nr
ID XP_012076710.1
description PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KC16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07258 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58485: 149535-149870 , PASA_asmbl_58486: 151927-152041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007943_180 0.0 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
2 Hb_004531_080 0.1131533443 - - hypothetical protein RCOM_1491960 [Ricinus communis]
3 Hb_003020_190 0.1143097888 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
4 Hb_003095_100 0.1189046761 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001123_310 0.1198815888 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
6 Hb_003109_010 0.1204600642 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
7 Hb_000120_300 0.1242277146 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
8 Hb_000190_220 0.1250978367 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
9 Hb_021346_050 0.1280732352 - - xylulose kinase, putative [Ricinus communis]
10 Hb_024973_020 0.1282959239 - - Protein regulator of cytokinesis, putative [Ricinus communis]
11 Hb_002871_130 0.1290153363 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
12 Hb_002942_120 0.1290898457 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
13 Hb_001501_070 0.1320680816 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
14 Hb_000907_140 0.1336874853 - - PREDICTED: annexin D5-like [Jatropha curcas]
15 Hb_000483_080 0.1350671258 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
16 Hb_004218_050 0.1380834308 - - annexin [Manihot esculenta]
17 Hb_038044_010 0.1386369062 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
18 Hb_001934_040 0.1438402413 - - PREDICTED: vacuolar iron transporter 1-like [Jatropha curcas]
19 Hb_000230_190 0.1488370364 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
20 Hb_010868_040 0.1490790757 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_007943_180 Hb_007943_180 Hb_004531_080 Hb_004531_080 Hb_007943_180--Hb_004531_080 Hb_003020_190 Hb_003020_190 Hb_007943_180--Hb_003020_190 Hb_003095_100 Hb_003095_100 Hb_007943_180--Hb_003095_100 Hb_001123_310 Hb_001123_310 Hb_007943_180--Hb_001123_310 Hb_003109_010 Hb_003109_010 Hb_007943_180--Hb_003109_010 Hb_000120_300 Hb_000120_300 Hb_007943_180--Hb_000120_300 Hb_002871_130 Hb_002871_130 Hb_004531_080--Hb_002871_130 Hb_000500_340 Hb_000500_340 Hb_004531_080--Hb_000500_340 Hb_004007_130 Hb_004007_130 Hb_004531_080--Hb_004007_130 Hb_004531_080--Hb_001123_310 Hb_000483_080 Hb_000483_080 Hb_004531_080--Hb_000483_080 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_003020_190--Hb_071674_010 Hb_006133_020 Hb_006133_020 Hb_003020_190--Hb_006133_020 Hb_001862_050 Hb_001862_050 Hb_003020_190--Hb_001862_050 Hb_000991_030 Hb_000991_030 Hb_003020_190--Hb_000991_030 Hb_024973_020 Hb_024973_020 Hb_003095_100--Hb_024973_020 Hb_001501_070 Hb_001501_070 Hb_003095_100--Hb_001501_070 Hb_002942_120 Hb_002942_120 Hb_003095_100--Hb_002942_120 Hb_038044_010 Hb_038044_010 Hb_003095_100--Hb_038044_010 Hb_001536_020 Hb_001536_020 Hb_003095_100--Hb_001536_020 Hb_001123_310--Hb_000120_300 Hb_000207_350 Hb_000207_350 Hb_001123_310--Hb_000207_350 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_001123_310--Hb_006133_020 Hb_033041_010 Hb_033041_010 Hb_003109_010--Hb_033041_010 Hb_007632_080 Hb_007632_080 Hb_003109_010--Hb_007632_080 Hb_002232_310 Hb_002232_310 Hb_003109_010--Hb_002232_310 Hb_001584_360 Hb_001584_360 Hb_003109_010--Hb_001584_360 Hb_101133_050 Hb_101133_050 Hb_003109_010--Hb_101133_050 Hb_000120_300--Hb_000483_080 Hb_021346_050 Hb_021346_050 Hb_000120_300--Hb_021346_050 Hb_000120_300--Hb_000207_350 Hb_000088_240 Hb_000088_240 Hb_000120_300--Hb_000088_240 Hb_010868_040 Hb_010868_040 Hb_000120_300--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0699852 0.100331 1.6458 0.654559 0.0542206 0.0195836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.063504 0.0749578 0.0238626 0.247881 0.425787

CAGE analysis