Hb_007945_040

Information

Type -
Description -
Location Contig7945: 56650-59185
Sequence    

Annotation

kegg
ID pop:POPTR_0019s098401
description hypothetical protein
nr
ID XP_012076887.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID U5FH17
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s098401g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007945_040 0.0 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
2 Hb_004994_060 0.0308333554 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
3 Hb_003494_170 0.0333974563 - - -
4 Hb_000017_010 0.033761006 - - -
5 Hb_002028_080 0.0341611157 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
6 Hb_077421_010 0.0343771993 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
7 Hb_011269_050 0.0362668203 - - -
8 Hb_001827_020 0.0370462209 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001768_030 0.0409894675 - - -
10 Hb_000922_230 0.0427592128 - - -
11 Hb_004724_110 0.0461167682 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
12 Hb_000270_570 0.0471110772 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
13 Hb_004642_010 0.0496533135 - - Integrase core domain, putative [Oryza sativa Japonica Group]
14 Hb_138358_010 0.0500150337 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
15 Hb_003147_030 0.0502480518 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
16 Hb_027846_010 0.099334125 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_184484_010 0.1083916137 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_002120_020 0.1168654231 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
19 Hb_006642_010 0.1195509461 - - -
20 Hb_038005_010 0.1367275799 - - PREDICTED: thaumatin-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_007945_040 Hb_007945_040 Hb_004994_060 Hb_004994_060 Hb_007945_040--Hb_004994_060 Hb_003494_170 Hb_003494_170 Hb_007945_040--Hb_003494_170 Hb_000017_010 Hb_000017_010 Hb_007945_040--Hb_000017_010 Hb_002028_080 Hb_002028_080 Hb_007945_040--Hb_002028_080 Hb_077421_010 Hb_077421_010 Hb_007945_040--Hb_077421_010 Hb_011269_050 Hb_011269_050 Hb_007945_040--Hb_011269_050 Hb_004994_060--Hb_003494_170 Hb_004994_060--Hb_000017_010 Hb_004994_060--Hb_002028_080 Hb_004994_060--Hb_077421_010 Hb_004994_060--Hb_011269_050 Hb_001827_020 Hb_001827_020 Hb_004994_060--Hb_001827_020 Hb_003494_170--Hb_000017_010 Hb_003494_170--Hb_002028_080 Hb_003494_170--Hb_077421_010 Hb_003494_170--Hb_011269_050 Hb_003494_170--Hb_001827_020 Hb_000017_010--Hb_002028_080 Hb_000017_010--Hb_077421_010 Hb_000017_010--Hb_011269_050 Hb_000017_010--Hb_001827_020 Hb_002028_080--Hb_077421_010 Hb_002028_080--Hb_011269_050 Hb_002028_080--Hb_001827_020 Hb_077421_010--Hb_011269_050 Hb_077421_010--Hb_001827_020 Hb_011269_050--Hb_001827_020 Hb_001768_030 Hb_001768_030 Hb_011269_050--Hb_001768_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0374347 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0337747 0

CAGE analysis