Hb_007951_060

Information

Type -
Description -
Location Contig7951: 49851-53789
Sequence    

Annotation

kegg
ID rcu:RCOM_0898880
description hypothetical protein
nr
ID XP_012073210.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KXV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06161 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58510: 50076-52269 , PASA_asmbl_58511: 51521-51762 , PASA_asmbl_58512: 53001-53167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_060 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_001305_010 0.049791757 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
3 Hb_000327_120 0.0533856437 - - FGFR1 oncogene partner, putative [Ricinus communis]
4 Hb_000926_280 0.0595503265 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
5 Hb_001439_150 0.0596195224 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
6 Hb_003417_020 0.0627664048 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
7 Hb_007576_040 0.0641681154 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
8 Hb_006185_050 0.0690508376 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
9 Hb_025645_010 0.0729620267 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
10 Hb_003175_010 0.0735597892 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
11 Hb_000230_200 0.0740678019 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
12 Hb_010661_030 0.0740826331 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
13 Hb_002685_140 0.0747448129 - - PREDICTED: membrin-11 [Jatropha curcas]
14 Hb_001635_170 0.0752087047 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
15 Hb_033843_010 0.0766745999 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
16 Hb_001677_210 0.0771493812 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
17 Hb_007594_030 0.0786503595 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
18 Hb_000000_080 0.0790120674 - - lipoate-protein ligase B, putative [Ricinus communis]
19 Hb_000395_170 0.0795387857 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
20 Hb_005503_030 0.0798311814 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007951_060 Hb_007951_060 Hb_001305_010 Hb_001305_010 Hb_007951_060--Hb_001305_010 Hb_000327_120 Hb_000327_120 Hb_007951_060--Hb_000327_120 Hb_000926_280 Hb_000926_280 Hb_007951_060--Hb_000926_280 Hb_001439_150 Hb_001439_150 Hb_007951_060--Hb_001439_150 Hb_003417_020 Hb_003417_020 Hb_007951_060--Hb_003417_020 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040 Hb_006185_050 Hb_006185_050 Hb_001305_010--Hb_006185_050 Hb_001305_010--Hb_003417_020 Hb_002530_030 Hb_002530_030 Hb_001305_010--Hb_002530_030 Hb_001305_010--Hb_000327_120 Hb_000853_430 Hb_000853_430 Hb_001305_010--Hb_000853_430 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_000327_120--Hb_006185_050 Hb_003175_010 Hb_003175_010 Hb_000926_280--Hb_003175_010 Hb_000030_300 Hb_000030_300 Hb_000926_280--Hb_000030_300 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000926_280--Hb_000327_120 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000000_080 Hb_000000_080 Hb_001439_150--Hb_000000_080 Hb_001439_150--Hb_000327_120 Hb_168707_030 Hb_168707_030 Hb_001439_150--Hb_168707_030 Hb_003126_050 Hb_003126_050 Hb_003417_020--Hb_003126_050 Hb_007691_030 Hb_007691_030 Hb_003417_020--Hb_007691_030 Hb_003417_020--Hb_003175_010 Hb_019280_040 Hb_019280_040 Hb_003417_020--Hb_019280_040 Hb_010661_030 Hb_010661_030 Hb_007576_040--Hb_010661_030 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_063716_050 Hb_063716_050 Hb_007576_040--Hb_063716_050 Hb_007576_040--Hb_000327_120 Hb_001512_060 Hb_001512_060 Hb_007576_040--Hb_001512_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2722 3.41665 5.70488 4.20304 8.1554 8.5609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.83795 8.17194 7.93237 4.46486 2.44529

CAGE analysis