Hb_007951_080

Information

Type -
Description -
Location Contig7951: 81968-84884
Sequence    

Annotation

kegg
ID rcu:RCOM_0898830
description lactoylglutathione lyase, putative
nr
ID XP_002517606.1
description lactoylglutathione lyase, putative [Ricinus communis]
swissprot
ID Q8CXK5
description Metallothiol transferase FosB OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=fosB PE=3 SV=2
trembl
ID B9RV37
description Lactoylglutathione lyase, putative OS=Ricinus communis GN=RCOM_0898830 PE=4 SV=1
Gene Ontology
ID GO:0016829
description lactoylglutathione lyase glyoxalase i family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58515: 81866-83392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_080 0.0 - - lactoylglutathione lyase, putative [Ricinus communis]
2 Hb_000175_210 0.1700940337 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
3 Hb_001890_040 0.1794520714 - - receptor-kinase, putative [Ricinus communis]
4 Hb_028013_030 0.1835737673 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_020273_020 0.186651924 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000321_040 0.1867887711 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
7 Hb_002805_260 0.1993951415 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006120_140 0.2077654015 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
9 Hb_007654_010 0.209705463 - - valacyclovir hydrolase, putative [Ricinus communis]
10 Hb_001476_030 0.2106564179 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
11 Hb_000000_040 0.2124958301 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
12 Hb_036182_010 0.232984942 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
13 Hb_001277_120 0.2362167156 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
14 Hb_010672_040 0.2362294694 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
15 Hb_124302_010 0.2369508246 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
16 Hb_000621_100 0.2371320308 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001769_150 0.2389042064 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
18 Hb_007163_030 0.2406948671 - - hypothetical protein RCOM_0187400 [Ricinus communis]
19 Hb_007943_170 0.2407978002 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
20 Hb_007558_110 0.2409971324 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]

Gene co-expression network

sample Hb_007951_080 Hb_007951_080 Hb_000175_210 Hb_000175_210 Hb_007951_080--Hb_000175_210 Hb_001890_040 Hb_001890_040 Hb_007951_080--Hb_001890_040 Hb_028013_030 Hb_028013_030 Hb_007951_080--Hb_028013_030 Hb_020273_020 Hb_020273_020 Hb_007951_080--Hb_020273_020 Hb_000321_040 Hb_000321_040 Hb_007951_080--Hb_000321_040 Hb_002805_260 Hb_002805_260 Hb_007951_080--Hb_002805_260 Hb_000175_210--Hb_020273_020 Hb_000175_210--Hb_001890_040 Hb_000000_040 Hb_000000_040 Hb_000175_210--Hb_000000_040 Hb_124302_010 Hb_124302_010 Hb_000175_210--Hb_124302_010 Hb_000175_210--Hb_028013_030 Hb_006120_140 Hb_006120_140 Hb_000175_210--Hb_006120_140 Hb_001890_040--Hb_028013_030 Hb_001890_040--Hb_006120_140 Hb_001890_040--Hb_020273_020 Hb_001890_040--Hb_000321_040 Hb_001890_040--Hb_000000_040 Hb_028013_030--Hb_006120_140 Hb_028013_030--Hb_020273_020 Hb_028013_030--Hb_000321_040 Hb_000621_100 Hb_000621_100 Hb_028013_030--Hb_000621_100 Hb_020273_020--Hb_000000_040 Hb_020273_020--Hb_006120_140 Hb_020273_020--Hb_000321_040 Hb_020273_020--Hb_000621_100 Hb_000321_040--Hb_006120_140 Hb_000321_040--Hb_000000_040 Hb_000321_040--Hb_000621_100 Hb_007654_010 Hb_007654_010 Hb_002805_260--Hb_007654_010 Hb_027028_010 Hb_027028_010 Hb_002805_260--Hb_027028_010 Hb_002805_260--Hb_028013_030 Hb_003119_120 Hb_003119_120 Hb_002805_260--Hb_003119_120 Hb_173764_010 Hb_173764_010 Hb_002805_260--Hb_173764_010 Hb_002805_260--Hb_001890_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.066328 0.0336093 2.49035 0.206208 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0764943 0 0 0.537397 0

CAGE analysis