Hb_007951_090

Information

Type -
Description -
Location Contig7951: 84910-85678
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06080g
description hypothetical protein
nr
ID XP_006385500.1
description hypothetical protein POPTR_0003s06080g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GPS8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06080g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58516: 85064-85262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_090 0.0 - - hypothetical protein POPTR_0003s06080g [Populus trichocarpa]
2 Hb_000321_010 0.1513308447 - - Chitinase 1 precursor, putative [Ricinus communis]
3 Hb_101370_010 0.1573314586 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_002783_210 0.166978259 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
5 Hb_010810_040 0.1810849979 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
6 Hb_003529_010 0.1832833661 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
7 Hb_001489_040 0.1844895949 - - PREDICTED: galactose oxidase [Jatropha curcas]
8 Hb_091336_010 0.1847970773 - - -
9 Hb_003012_010 0.1857934396 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005001_010 0.1860546737 - - GAST1 protein precursor, putative [Ricinus communis]
11 Hb_000925_020 0.1877156779 - - PREDICTED: protein YLS9 [Jatropha curcas]
12 Hb_000661_010 0.1879070096 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
13 Hb_009620_010 0.1942350838 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
14 Hb_002984_020 0.1993352473 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
15 Hb_001115_100 0.2016302163 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
16 Hb_002035_020 0.2031220315 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]
17 Hb_017549_010 0.2038812618 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
18 Hb_006550_010 0.2067680475 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
19 Hb_001957_050 0.2080009904 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_000769_050 0.2081490184 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]

Gene co-expression network

sample Hb_007951_090 Hb_007951_090 Hb_000321_010 Hb_000321_010 Hb_007951_090--Hb_000321_010 Hb_101370_010 Hb_101370_010 Hb_007951_090--Hb_101370_010 Hb_002783_210 Hb_002783_210 Hb_007951_090--Hb_002783_210 Hb_010810_040 Hb_010810_040 Hb_007951_090--Hb_010810_040 Hb_003529_010 Hb_003529_010 Hb_007951_090--Hb_003529_010 Hb_001489_040 Hb_001489_040 Hb_007951_090--Hb_001489_040 Hb_000321_010--Hb_010810_040 Hb_010012_020 Hb_010012_020 Hb_000321_010--Hb_010012_020 Hb_002420_030 Hb_002420_030 Hb_000321_010--Hb_002420_030 Hb_009620_010 Hb_009620_010 Hb_000321_010--Hb_009620_010 Hb_000321_010--Hb_001489_040 Hb_005056_100 Hb_005056_100 Hb_101370_010--Hb_005056_100 Hb_000732_240 Hb_000732_240 Hb_101370_010--Hb_000732_240 Hb_000172_230 Hb_000172_230 Hb_101370_010--Hb_000172_230 Hb_048944_020 Hb_048944_020 Hb_101370_010--Hb_048944_020 Hb_158349_010 Hb_158349_010 Hb_101370_010--Hb_158349_010 Hb_002783_210--Hb_003529_010 Hb_001675_260 Hb_001675_260 Hb_002783_210--Hb_001675_260 Hb_000604_050 Hb_000604_050 Hb_002783_210--Hb_000604_050 Hb_008566_070 Hb_008566_070 Hb_002783_210--Hb_008566_070 Hb_017549_010 Hb_017549_010 Hb_002783_210--Hb_017549_010 Hb_005643_080 Hb_005643_080 Hb_002783_210--Hb_005643_080 Hb_010810_040--Hb_001489_040 Hb_010810_040--Hb_009620_010 Hb_010810_040--Hb_002420_030 Hb_002869_040 Hb_002869_040 Hb_010810_040--Hb_002869_040 Hb_003529_010--Hb_001675_260 Hb_004007_190 Hb_004007_190 Hb_003529_010--Hb_004007_190 Hb_001318_180 Hb_001318_180 Hb_003529_010--Hb_001318_180 Hb_000021_010 Hb_000021_010 Hb_003529_010--Hb_000021_010 Hb_003529_010--Hb_000604_050 Hb_003674_010 Hb_003674_010 Hb_001489_040--Hb_003674_010 Hb_000028_360 Hb_000028_360 Hb_001489_040--Hb_000028_360 Hb_006916_220 Hb_006916_220 Hb_001489_040--Hb_006916_220 Hb_002049_030 Hb_002049_030 Hb_001489_040--Hb_002049_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235008 9.04517 2.8103 13.4444 1.24835 0.327213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.494231 0

CAGE analysis