Hb_007951_100

Information

Type -
Description -
Location Contig7951: 87981-90732
Sequence    

Annotation

kegg
ID pop:POPTR_0001s17170g
description POPTRDRAFT_640630; PEPTIDE DEFORMYLASE 1A family protein
nr
ID XP_012073214.1
description PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID Q9FUZ0
description Peptide deformylase 1A, chloroplastic OS=Solanum lycopersicum GN=PDF1A PE=2 SV=1
trembl
ID E6NUC7
description JHL06P13.18 protein OS=Jatropha curcas GN=JHL06P13.18 PE=3 SV=1
Gene Ontology
ID GO:0009505
description peptide deformylase chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58517: 88020-90434 , PASA_asmbl_58518: 89850-90731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007951_100 0.0 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_006452_160 0.0916472879 - - structural constituent of ribosome, putative [Ricinus communis]
3 Hb_000140_330 0.0927036534 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
4 Hb_002805_170 0.0943015191 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
5 Hb_002301_270 0.0945295633 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
6 Hb_156144_030 0.0957391798 - - hypothetical protein RCOM_0187400 [Ricinus communis]
7 Hb_007943_120 0.0958725953 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
8 Hb_005188_060 0.099407259 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_001946_240 0.1011560705 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
10 Hb_000453_190 0.1031065451 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
11 Hb_003142_070 0.1041787961 - - hypothetical protein F383_14657 [Gossypium arboreum]
12 Hb_002947_040 0.1058851065 - - PREDICTED: uncharacterized protein LOC105131897 isoform X1 [Populus euphratica]
13 Hb_004899_030 0.1061313266 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
14 Hb_000953_030 0.1074256149 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
15 Hb_002783_120 0.107980924 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
16 Hb_001117_190 0.1097915991 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
17 Hb_000563_330 0.1100165204 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_001473_080 0.1108820506 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
19 Hb_001474_030 0.1133156668 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
20 Hb_001771_120 0.1143083943 - - K+ transport growth defect-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_007951_100 Hb_007951_100 Hb_006452_160 Hb_006452_160 Hb_007951_100--Hb_006452_160 Hb_000140_330 Hb_000140_330 Hb_007951_100--Hb_000140_330 Hb_002805_170 Hb_002805_170 Hb_007951_100--Hb_002805_170 Hb_002301_270 Hb_002301_270 Hb_007951_100--Hb_002301_270 Hb_156144_030 Hb_156144_030 Hb_007951_100--Hb_156144_030 Hb_007943_120 Hb_007943_120 Hb_007951_100--Hb_007943_120 Hb_002739_130 Hb_002739_130 Hb_006452_160--Hb_002739_130 Hb_000563_330 Hb_000563_330 Hb_006452_160--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_006452_160--Hb_000140_330 Hb_016734_090 Hb_016734_090 Hb_006452_160--Hb_016734_090 Hb_005883_010 Hb_005883_010 Hb_000140_330--Hb_005883_010 Hb_000140_330--Hb_005188_060 Hb_000140_330--Hb_007943_120 Hb_000406_240 Hb_000406_240 Hb_000140_330--Hb_000406_240 Hb_000368_020 Hb_000368_020 Hb_000140_330--Hb_000368_020 Hb_012184_050 Hb_012184_050 Hb_002805_170--Hb_012184_050 Hb_001703_130 Hb_001703_130 Hb_002805_170--Hb_001703_130 Hb_010883_080 Hb_010883_080 Hb_002805_170--Hb_010883_080 Hb_000045_320 Hb_000045_320 Hb_002805_170--Hb_000045_320 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_028872_120 Hb_028872_120 Hb_002301_270--Hb_028872_120 Hb_009151_020 Hb_009151_020 Hb_002301_270--Hb_009151_020 Hb_000347_570 Hb_000347_570 Hb_002301_270--Hb_000347_570 Hb_022693_030 Hb_022693_030 Hb_002301_270--Hb_022693_030 Hb_001178_150 Hb_001178_150 Hb_002301_270--Hb_001178_150 Hb_002301_270--Hb_007943_120 Hb_000953_030 Hb_000953_030 Hb_156144_030--Hb_000953_030 Hb_001946_240 Hb_001946_240 Hb_156144_030--Hb_001946_240 Hb_000920_280 Hb_000920_280 Hb_156144_030--Hb_000920_280 Hb_000359_330 Hb_000359_330 Hb_156144_030--Hb_000359_330 Hb_001473_080 Hb_001473_080 Hb_156144_030--Hb_001473_080 Hb_007943_120--Hb_005188_060 Hb_007943_120--Hb_028872_120 Hb_007943_120--Hb_005883_010 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_004635_050 Hb_004635_050 Hb_007943_120--Hb_004635_050 Hb_003680_230 Hb_003680_230 Hb_007943_120--Hb_003680_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.7008 33.6119 31.1187 8.36058 53.7279 35.4458
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4289 13.5197 9.13175 7.20522 9.57025

CAGE analysis