Hb_007955_050

Information

Type -
Description -
Location Contig7955: 88090-100756
Sequence    

Annotation

kegg
ID cit:102613427
description multiple RNA-binding domain-containing protein 1-like
nr
ID XP_012078405.1
description PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q4PC17
description Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
trembl
ID A0A067K993
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13675 PE=4 SV=1
Gene Ontology
ID GO:0000166
description multiple rna-binding domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58530: 88171-99295 , PASA_asmbl_58531: 91191-91716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007955_050 0.0 - - PREDICTED: multiple RNA-binding domain-containing protein 1 [Jatropha curcas]
2 Hb_000795_040 0.072638113 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
3 Hb_000996_020 0.0743240896 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
4 Hb_000373_170 0.0745890394 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
5 Hb_001925_060 0.0787010851 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
6 Hb_000189_600 0.078875672 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
7 Hb_000661_120 0.0789900555 - - cap binding protein, putative [Ricinus communis]
8 Hb_021374_010 0.0790408755 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
9 Hb_002357_070 0.0795377027 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
10 Hb_000879_040 0.0803555315 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
11 Hb_002581_010 0.0805952085 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
12 Hb_001008_070 0.0839879836 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
13 Hb_008114_040 0.0840388507 - - Fanconi anemia group D2 [Gossypium arboreum]
14 Hb_001408_110 0.08473899 - - hypothetical protein EUGRSUZ_I02762 [Eucalyptus grandis]
15 Hb_000011_270 0.0847521733 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
16 Hb_002411_110 0.0856636866 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
17 Hb_033312_130 0.0858254 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
18 Hb_000085_210 0.087475025 - - DNA topoisomerase type I, putative [Ricinus communis]
19 Hb_002016_090 0.0876596256 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
20 Hb_004544_040 0.0878590729 - - hypothetical protein PHAVU_010G103000g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_007955_050 Hb_007955_050 Hb_000795_040 Hb_000795_040 Hb_007955_050--Hb_000795_040 Hb_000996_020 Hb_000996_020 Hb_007955_050--Hb_000996_020 Hb_000373_170 Hb_000373_170 Hb_007955_050--Hb_000373_170 Hb_001925_060 Hb_001925_060 Hb_007955_050--Hb_001925_060 Hb_000189_600 Hb_000189_600 Hb_007955_050--Hb_000189_600 Hb_000661_120 Hb_000661_120 Hb_007955_050--Hb_000661_120 Hb_000085_210 Hb_000085_210 Hb_000795_040--Hb_000085_210 Hb_002581_010 Hb_002581_010 Hb_000795_040--Hb_002581_010 Hb_011174_020 Hb_011174_020 Hb_000795_040--Hb_011174_020 Hb_017469_110 Hb_017469_110 Hb_000795_040--Hb_017469_110 Hb_000795_040--Hb_001925_060 Hb_000879_040 Hb_000879_040 Hb_000795_040--Hb_000879_040 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_004517_020 Hb_004517_020 Hb_000373_170--Hb_004517_020 Hb_000373_170--Hb_000445_060 Hb_001723_010 Hb_001723_010 Hb_000373_170--Hb_001723_010 Hb_000373_170--Hb_000661_120 Hb_002768_050 Hb_002768_050 Hb_000373_170--Hb_002768_050 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_001925_060--Hb_011174_020 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_004333_040 Hb_004333_040 Hb_000189_600--Hb_004333_040 Hb_183433_010 Hb_183433_010 Hb_000189_600--Hb_183433_010 Hb_000617_230 Hb_000617_230 Hb_000189_600--Hb_000617_230 Hb_001377_190 Hb_001377_190 Hb_000189_600--Hb_001377_190 Hb_001430_080 Hb_001430_080 Hb_000189_600--Hb_001430_080 Hb_000521_330 Hb_000521_330 Hb_000189_600--Hb_000521_330 Hb_000661_120--Hb_000445_060 Hb_000340_030 Hb_000340_030 Hb_000661_120--Hb_000340_030 Hb_000661_120--Hb_000529_060 Hb_000868_120 Hb_000868_120 Hb_000661_120--Hb_000868_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44404 12.0145 10.8496 7.98252 4.9685 9.22258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46545 6.2857 3.77043 11.321 10.4885

CAGE analysis