Hb_007975_060

Information

Type -
Description -
Location Contig7975: 88322-93421
Sequence    

Annotation

kegg
ID rcu:RCOM_0904880
description hypothetical protein
nr
ID XP_012091354.1
description PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
swissprot
ID Q8GUI4
description Uncharacterized GPI-anchored protein At1g61900 OS=Arabidopsis thaliana GN=At1g61900 PE=1 SV=1
trembl
ID A0A067JMN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21225 PE=4 SV=1
Gene Ontology
ID GO:0009506
description uncharacterized gpi-anchored protein at1g61900-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58590: 88411-93457 , PASA_asmbl_58591: 88411-93457 , PASA_asmbl_58592: 88411-93468 , PASA_asmbl_58593: 88411-93468
cDNA
(Sanger)
(ID:Location)		 009_N06.ab1: 88478-90333

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007975_060 0.0 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
2 Hb_004754_050 0.0622178795 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
3 Hb_000061_180 0.0640536101 - - exonuclease, putative [Ricinus communis]
4 Hb_002157_120 0.0647956987 - - conserved hypothetical protein [Ricinus communis]
5 Hb_013405_020 0.0657468204 - - -
6 Hb_133702_010 0.0689633834 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000023_260 0.0762202282 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
8 Hb_006132_090 0.0769690574 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
9 Hb_005167_010 0.0772268577 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
10 Hb_008421_020 0.0773955832 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
11 Hb_005800_030 0.0806442288 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
12 Hb_005016_040 0.0829085281 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X2 [Jatropha curcas]
13 Hb_000028_520 0.0830829764 - - hypothetical protein L484_025125 [Morus notabilis]
14 Hb_010931_130 0.0860559599 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
15 Hb_000058_130 0.0881661335 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
16 Hb_000244_180 0.0884393892 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003119_060 0.0884736454 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
18 Hb_007002_020 0.0895961689 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
19 Hb_000080_130 0.0906131834 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
20 Hb_004452_120 0.0911149503 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]

Gene co-expression network

sample Hb_007975_060 Hb_007975_060 Hb_004754_050 Hb_004754_050 Hb_007975_060--Hb_004754_050 Hb_000061_180 Hb_000061_180 Hb_007975_060--Hb_000061_180 Hb_002157_120 Hb_002157_120 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_133702_010 Hb_133702_010 Hb_007975_060--Hb_133702_010 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260 Hb_004754_050--Hb_002157_120 Hb_019181_040 Hb_019181_040 Hb_004754_050--Hb_019181_040 Hb_004754_050--Hb_133702_010 Hb_001087_030 Hb_001087_030 Hb_004754_050--Hb_001087_030 Hb_000058_130 Hb_000058_130 Hb_004754_050--Hb_000058_130 Hb_000375_390 Hb_000375_390 Hb_000061_180--Hb_000375_390 Hb_000061_180--Hb_000023_260 Hb_004452_120 Hb_004452_120 Hb_000061_180--Hb_004452_120 Hb_000061_180--Hb_133702_010 Hb_000061_180--Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_002157_120--Hb_000028_520 Hb_002157_120--Hb_000058_130 Hb_013575_010 Hb_013575_010 Hb_002157_120--Hb_013575_010 Hb_008421_020 Hb_008421_020 Hb_013405_020--Hb_008421_020 Hb_005016_040 Hb_005016_040 Hb_013405_020--Hb_005016_040 Hb_013405_020--Hb_002157_120 Hb_006132_090 Hb_006132_090 Hb_013405_020--Hb_006132_090 Hb_013405_020--Hb_004754_050 Hb_005800_030 Hb_005800_030 Hb_133702_010--Hb_005800_030 Hb_133702_010--Hb_004452_120 Hb_004545_110 Hb_004545_110 Hb_133702_010--Hb_004545_110 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_003878_090 Hb_003878_090 Hb_133702_010--Hb_003878_090 Hb_000023_260--Hb_000375_390 Hb_000212_230 Hb_000212_230 Hb_000023_260--Hb_000212_230 Hb_001314_080 Hb_001314_080 Hb_000023_260--Hb_001314_080 Hb_000023_260--Hb_133702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2503 8.93906 24.5444 23.5599 12.9294 12.6575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8364 18.4833 17.2403 8.73549 26.2052

CAGE analysis