Hb_007978_020

Information

Type transcription factor
Description TF Family: bZIP
Location Contig7978: 11435-18265
Sequence    

Annotation

kegg
ID vvi:100249156
description transcription factor TGA1
nr
ID XP_012075186.1
description PREDICTED: transcription factor TGA1-like [Jatropha curcas]
swissprot
ID Q39162
description Transcription factor TGA4 OS=Arabidopsis thaliana GN=TGA4 PE=1 SV=2
trembl
ID A0A067KGJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09366 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor tga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007978_020 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
2 Hb_181975_010 0.1740486107 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
3 Hb_041237_010 0.1783872307 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000574_150 0.1948238832 - - PREDICTED: protein SRG1-like [Jatropha curcas]
5 Hb_000014_130 0.1971785197 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
6 Hb_000617_040 0.2052737148 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
7 Hb_003398_010 0.2120334914 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
8 Hb_001396_170 0.2147925795 - - unnamed protein product [Vitis vinifera]
9 Hb_000062_500 0.2271783905 - - PREDICTED: urease-like [Zea mays]
10 Hb_032018_010 0.2330229054 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
11 Hb_167316_010 0.2343590359 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
12 Hb_003772_020 0.2379068564 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
13 Hb_031089_030 0.2438839104 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
14 Hb_003816_020 0.24611061 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
15 Hb_000317_090 0.2490053943 - - hypothetical protein RCOM_1176360 [Ricinus communis]
16 Hb_007257_050 0.2520360908 - - protein with unknown function [Ricinus communis]
17 Hb_005203_050 0.2523020588 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_000334_200 0.2606112649 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_000003_390 0.2645518026 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
20 Hb_001276_010 0.269103524 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_007978_020 Hb_007978_020 Hb_181975_010 Hb_181975_010 Hb_007978_020--Hb_181975_010 Hb_041237_010 Hb_041237_010 Hb_007978_020--Hb_041237_010 Hb_000574_150 Hb_000574_150 Hb_007978_020--Hb_000574_150 Hb_000014_130 Hb_000014_130 Hb_007978_020--Hb_000014_130 Hb_000617_040 Hb_000617_040 Hb_007978_020--Hb_000617_040 Hb_003398_010 Hb_003398_010 Hb_007978_020--Hb_003398_010 Hb_007257_050 Hb_007257_050 Hb_181975_010--Hb_007257_050 Hb_001907_100 Hb_001907_100 Hb_181975_010--Hb_001907_100 Hb_000003_390 Hb_000003_390 Hb_181975_010--Hb_000003_390 Hb_031089_030 Hb_031089_030 Hb_181975_010--Hb_031089_030 Hb_001493_010 Hb_001493_010 Hb_181975_010--Hb_001493_010 Hb_041237_010--Hb_003398_010 Hb_041237_010--Hb_000014_130 Hb_041237_010--Hb_000617_040 Hb_000413_170 Hb_000413_170 Hb_041237_010--Hb_000413_170 Hb_003299_080 Hb_003299_080 Hb_041237_010--Hb_003299_080 Hb_000574_150--Hb_181975_010 Hb_001396_170 Hb_001396_170 Hb_000574_150--Hb_001396_170 Hb_000574_150--Hb_000003_390 Hb_000574_150--Hb_007257_050 Hb_007680_020 Hb_007680_020 Hb_000574_150--Hb_007680_020 Hb_003772_020 Hb_003772_020 Hb_000014_130--Hb_003772_020 Hb_002904_090 Hb_002904_090 Hb_000014_130--Hb_002904_090 Hb_032018_010 Hb_032018_010 Hb_000014_130--Hb_032018_010 Hb_000014_130--Hb_003398_010 Hb_001247_140 Hb_001247_140 Hb_000617_040--Hb_001247_140 Hb_000617_040--Hb_003398_010 Hb_000617_040--Hb_031089_030 Hb_004631_160 Hb_004631_160 Hb_000617_040--Hb_004631_160 Hb_000617_040--Hb_007257_050 Hb_003398_010--Hb_004631_160 Hb_003398_010--Hb_003299_080 Hb_000212_130 Hb_000212_130 Hb_003398_010--Hb_000212_130 Hb_003398_010--Hb_031089_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.02101 7.23878 0.122045 0.455899 2.17006 6.8
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.358634 0.130229 0 0.15573 0.0456009

CAGE analysis