Hb_007982_050

Information

Type -
Description -
Location Contig7982: 44973-54292
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08500g
description POPTRDRAFT_864934; hypothetical protein
nr
ID XP_012075205.1
description PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
swissprot
ID Q9XIC7
description Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1
trembl
ID A0A067KGL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09386 PE=3 SV=1
Gene Ontology
ID GO:0016021
description somatic embryogenesis receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58614: 44973-54122 , PASA_asmbl_58615: 50287-50766 , PASA_asmbl_58616: 47844-48203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007982_050 0.0 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Jatropha curcas]
2 Hb_130389_010 0.095219025 - - PREDICTED: la protein 1 [Jatropha curcas]
3 Hb_077048_010 0.1140189718 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001373_160 0.1144466368 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
5 Hb_002890_100 0.1145784482 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
6 Hb_008160_030 0.1148080792 - - DNA binding protein, putative [Ricinus communis]
7 Hb_000184_150 0.1154519749 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
8 Hb_002016_060 0.1183451423 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
9 Hb_012940_040 0.120333724 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
10 Hb_029695_020 0.1207981504 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
11 Hb_002666_080 0.1225428246 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000264_080 0.1230668852 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
13 Hb_000352_260 0.1243236958 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
14 Hb_001047_200 0.126229184 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
15 Hb_000926_010 0.127384596 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
16 Hb_000823_030 0.1274893439 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
17 Hb_004319_070 0.1284635385 - - hypothetical protein RCOM_0852460 [Ricinus communis]
18 Hb_000139_320 0.1293295463 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
19 Hb_015183_100 0.1295825242 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
20 Hb_003780_090 0.1328398456 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]

Gene co-expression network

sample Hb_007982_050 Hb_007982_050 Hb_130389_010 Hb_130389_010 Hb_007982_050--Hb_130389_010 Hb_077048_010 Hb_077048_010 Hb_007982_050--Hb_077048_010 Hb_001373_160 Hb_001373_160 Hb_007982_050--Hb_001373_160 Hb_002890_100 Hb_002890_100 Hb_007982_050--Hb_002890_100 Hb_008160_030 Hb_008160_030 Hb_007982_050--Hb_008160_030 Hb_000184_150 Hb_000184_150 Hb_007982_050--Hb_000184_150 Hb_000526_030 Hb_000526_030 Hb_130389_010--Hb_000526_030 Hb_004195_120 Hb_004195_120 Hb_130389_010--Hb_004195_120 Hb_021530_010 Hb_021530_010 Hb_130389_010--Hb_021530_010 Hb_127599_010 Hb_127599_010 Hb_130389_010--Hb_127599_010 Hb_004319_070 Hb_004319_070 Hb_130389_010--Hb_004319_070 Hb_077048_010--Hb_008160_030 Hb_002675_110 Hb_002675_110 Hb_077048_010--Hb_002675_110 Hb_000352_260 Hb_000352_260 Hb_077048_010--Hb_000352_260 Hb_010417_070 Hb_010417_070 Hb_077048_010--Hb_010417_070 Hb_000537_140 Hb_000537_140 Hb_077048_010--Hb_000537_140 Hb_000174_150 Hb_000174_150 Hb_077048_010--Hb_000174_150 Hb_033554_020 Hb_033554_020 Hb_001373_160--Hb_033554_020 Hb_000134_250 Hb_000134_250 Hb_001373_160--Hb_000134_250 Hb_012940_040 Hb_012940_040 Hb_001373_160--Hb_012940_040 Hb_004724_370 Hb_004724_370 Hb_001373_160--Hb_004724_370 Hb_001171_030 Hb_001171_030 Hb_001373_160--Hb_001171_030 Hb_010287_030 Hb_010287_030 Hb_001373_160--Hb_010287_030 Hb_118840_050 Hb_118840_050 Hb_002890_100--Hb_118840_050 Hb_002666_080 Hb_002666_080 Hb_002890_100--Hb_002666_080 Hb_002890_100--Hb_000184_150 Hb_029695_020 Hb_029695_020 Hb_002890_100--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_002890_100--Hb_001047_200 Hb_000917_160 Hb_000917_160 Hb_002890_100--Hb_000917_160 Hb_008160_030--Hb_000352_260 Hb_000940_200 Hb_000940_200 Hb_008160_030--Hb_000940_200 Hb_009083_070 Hb_009083_070 Hb_008160_030--Hb_009083_070 Hb_000363_400 Hb_000363_400 Hb_008160_030--Hb_000363_400 Hb_145880_010 Hb_145880_010 Hb_008160_030--Hb_145880_010 Hb_184798_080 Hb_184798_080 Hb_008160_030--Hb_184798_080 Hb_000184_150--Hb_001047_200 Hb_000577_030 Hb_000577_030 Hb_000184_150--Hb_000577_030 Hb_000823_030 Hb_000823_030 Hb_000184_150--Hb_000823_030 Hb_001723_140 Hb_001723_140 Hb_000184_150--Hb_001723_140 Hb_000184_150--Hb_000917_160 Hb_006618_090 Hb_006618_090 Hb_000184_150--Hb_006618_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4559 48.2125 35.1435 19.3388 21.3788 22.5463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.76135 6.01681 9.24265 42.2626 8.18975

CAGE analysis