Hb_007982_080

Information

Type -
Description -
Location Contig7982: 69552-78262
Sequence    

Annotation

kegg
ID tcc:TCM_001230
description Myosin-H heavy chain isoform 1
nr
ID XP_012075211.1
description PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DJV6
description Myosin-H heavy chain isoform 1 OS=Theobroma cacao GN=TCM_001230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58619: 69776-77946 , PASA_asmbl_58620: 70549-70801 , PASA_asmbl_58621: 73118-75549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007982_080 0.0 - - PREDICTED: uncharacterized protein LOC105636531 [Jatropha curcas]
2 Hb_073973_130 0.0668558862 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
3 Hb_020367_050 0.0710533973 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
4 Hb_002197_020 0.073993885 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
5 Hb_005288_150 0.0801089434 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
6 Hb_000185_070 0.0850026571 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027428_010 0.0855984611 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
8 Hb_005337_090 0.085757462 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
9 Hb_021576_100 0.0858411478 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
10 Hb_003579_050 0.0864521662 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
11 Hb_032920_060 0.0891156931 - - PREDICTED: mitotic checkpoint protein BUB3.1 [Jatropha curcas]
12 Hb_001247_130 0.0919393934 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
13 Hb_007416_300 0.0930539957 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
14 Hb_002872_030 0.0931979509 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
15 Hb_027073_030 0.0933018885 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
16 Hb_032208_040 0.0933850035 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
17 Hb_010407_050 0.0937554482 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
18 Hb_000576_020 0.0953957855 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
19 Hb_005144_090 0.0955179284 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
20 Hb_002928_010 0.0958488101 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]

Gene co-expression network

sample Hb_007982_080 Hb_007982_080 Hb_073973_130 Hb_073973_130 Hb_007982_080--Hb_073973_130 Hb_020367_050 Hb_020367_050 Hb_007982_080--Hb_020367_050 Hb_002197_020 Hb_002197_020 Hb_007982_080--Hb_002197_020 Hb_005288_150 Hb_005288_150 Hb_007982_080--Hb_005288_150 Hb_000185_070 Hb_000185_070 Hb_007982_080--Hb_000185_070 Hb_027428_010 Hb_027428_010 Hb_007982_080--Hb_027428_010 Hb_000107_190 Hb_000107_190 Hb_073973_130--Hb_000107_190 Hb_073973_130--Hb_027428_010 Hb_002872_030 Hb_002872_030 Hb_073973_130--Hb_002872_030 Hb_022132_050 Hb_022132_050 Hb_073973_130--Hb_022132_050 Hb_005337_090 Hb_005337_090 Hb_073973_130--Hb_005337_090 Hb_000610_010 Hb_000610_010 Hb_073973_130--Hb_000610_010 Hb_032208_040 Hb_032208_040 Hb_020367_050--Hb_032208_040 Hb_001329_130 Hb_001329_130 Hb_020367_050--Hb_001329_130 Hb_020367_050--Hb_005288_150 Hb_000926_310 Hb_000926_310 Hb_020367_050--Hb_000926_310 Hb_006960_050 Hb_006960_050 Hb_020367_050--Hb_006960_050 Hb_000141_250 Hb_000141_250 Hb_002197_020--Hb_000141_250 Hb_000039_220 Hb_000039_220 Hb_002197_020--Hb_000039_220 Hb_002197_020--Hb_000185_070 Hb_001981_030 Hb_001981_030 Hb_002197_020--Hb_001981_030 Hb_002197_020--Hb_002872_030 Hb_000260_100 Hb_000260_100 Hb_005288_150--Hb_000260_100 Hb_005288_150--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_005288_150--Hb_002997_080 Hb_002639_150 Hb_002639_150 Hb_005288_150--Hb_002639_150 Hb_005288_150--Hb_001329_130 Hb_000302_270 Hb_000302_270 Hb_000185_070--Hb_000302_270 Hb_000185_070--Hb_027428_010 Hb_000185_070--Hb_005337_090 Hb_000185_070--Hb_001981_030 Hb_003528_010 Hb_003528_010 Hb_000185_070--Hb_003528_010 Hb_000185_070--Hb_002872_030 Hb_027428_010--Hb_002872_030 Hb_027428_010--Hb_005337_090 Hb_006588_070 Hb_006588_070 Hb_027428_010--Hb_006588_070 Hb_010381_090 Hb_010381_090 Hb_027428_010--Hb_010381_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.8535 16.1688 33.4783 14.8986 23.6992 19.1495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2983 17.3936 18.309 16.5604 7.97866

CAGE analysis