Hb_008001_020

Information

Type transcription factor
Description TF Family: GRAS
Location Contig8001: 22943-24313
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05450g
description hypothetical protein
nr
ID XP_011037138.1
description PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
swissprot
ID Q9SZF7
description Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1
trembl
ID A0A067L9I1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20903 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein short-root-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58773: 22606-24088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008001_020 0.0 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
2 Hb_028008_030 0.1089206207 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
3 Hb_000586_100 0.1179789341 - - conserved hypothetical protein [Ricinus communis]
4 Hb_094637_010 0.1194941647 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]
5 Hb_000286_030 0.1246370829 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_028207_030 0.1274065941 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
7 Hb_001998_260 0.1289193891 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000761_030 0.1314719619 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
9 Hb_003439_090 0.1329890044 - - kinase, putative [Ricinus communis]
10 Hb_000081_030 0.1375987561 - - BnaC09g05810D [Brassica napus]
11 Hb_001799_090 0.1392042809 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
12 Hb_136884_010 0.1393461253 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_000230_160 0.1396204788 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
14 Hb_003805_080 0.1417879025 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
15 Hb_039496_010 0.1419852088 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
16 Hb_004724_070 0.1431027993 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
17 Hb_000487_140 0.1450700149 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_001493_170 0.1469857375 - - PREDICTED: uncharacterized protein LOC105631328 [Jatropha curcas]
19 Hb_013914_020 0.1470774821 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_002970_070 0.1521916605 - - multidrug/pheromone exporter protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_008001_020 Hb_008001_020 Hb_028008_030 Hb_028008_030 Hb_008001_020--Hb_028008_030 Hb_000586_100 Hb_000586_100 Hb_008001_020--Hb_000586_100 Hb_094637_010 Hb_094637_010 Hb_008001_020--Hb_094637_010 Hb_000286_030 Hb_000286_030 Hb_008001_020--Hb_000286_030 Hb_028207_030 Hb_028207_030 Hb_008001_020--Hb_028207_030 Hb_001998_260 Hb_001998_260 Hb_008001_020--Hb_001998_260 Hb_003805_080 Hb_003805_080 Hb_028008_030--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_028008_030--Hb_000230_160 Hb_001799_090 Hb_001799_090 Hb_028008_030--Hb_001799_090 Hb_028008_030--Hb_001998_260 Hb_039496_010 Hb_039496_010 Hb_028008_030--Hb_039496_010 Hb_003967_010 Hb_003967_010 Hb_028008_030--Hb_003967_010 Hb_013914_020 Hb_013914_020 Hb_000586_100--Hb_013914_020 Hb_003439_090 Hb_003439_090 Hb_000586_100--Hb_003439_090 Hb_000407_080 Hb_000407_080 Hb_000586_100--Hb_000407_080 Hb_006020_010 Hb_006020_010 Hb_000586_100--Hb_006020_010 Hb_006364_020 Hb_006364_020 Hb_000586_100--Hb_006364_020 Hb_003052_120 Hb_003052_120 Hb_000586_100--Hb_003052_120 Hb_008140_060 Hb_008140_060 Hb_094637_010--Hb_008140_060 Hb_000934_290 Hb_000934_290 Hb_094637_010--Hb_000934_290 Hb_009581_050 Hb_009581_050 Hb_094637_010--Hb_009581_050 Hb_001638_110 Hb_001638_110 Hb_094637_010--Hb_001638_110 Hb_000000_060 Hb_000000_060 Hb_094637_010--Hb_000000_060 Hb_094637_010--Hb_039496_010 Hb_000081_030 Hb_000081_030 Hb_000286_030--Hb_000081_030 Hb_000286_030--Hb_000230_160 Hb_000172_740 Hb_000172_740 Hb_000286_030--Hb_000172_740 Hb_001856_150 Hb_001856_150 Hb_000286_030--Hb_001856_150 Hb_006314_020 Hb_006314_020 Hb_000286_030--Hb_006314_020 Hb_001863_080 Hb_001863_080 Hb_000286_030--Hb_001863_080 Hb_000077_460 Hb_000077_460 Hb_028207_030--Hb_000077_460 Hb_002762_070 Hb_002762_070 Hb_028207_030--Hb_002762_070 Hb_031954_010 Hb_031954_010 Hb_028207_030--Hb_031954_010 Hb_004341_010 Hb_004341_010 Hb_028207_030--Hb_004341_010 Hb_031862_090 Hb_031862_090 Hb_028207_030--Hb_031862_090 Hb_027445_080 Hb_027445_080 Hb_028207_030--Hb_027445_080 Hb_001998_260--Hb_001799_090 Hb_005144_100 Hb_005144_100 Hb_001998_260--Hb_005144_100 Hb_003266_060 Hb_003266_060 Hb_001998_260--Hb_003266_060 Hb_002289_110 Hb_002289_110 Hb_001998_260--Hb_002289_110 Hb_001998_260--Hb_039496_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 23.9879 1.19842 28.7296 0.225513 0.139835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0510426 34.6455 2.72723

CAGE analysis