Hb_008014_030

Information

Type -
Description -
Location Contig8014: 14916-16722
Sequence    

Annotation

kegg
ID rcu:RCOM_1252070
description Aquaporin NIP1.1, putative
nr
ID XP_002522274.1
description Aquaporin NIP1.1, putative [Ricinus communis]
swissprot
ID Q8LFP7
description Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=2 SV=2
trembl
ID B9S8F5
description Aquaporin NIP1.1, putative OS=Ricinus communis GN=RCOM_1252070 PE=3 SV=1
Gene Ontology
ID GO:0016021
description aquaporin nip1-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58795: 15059-16436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008014_030 0.0 - - Aquaporin NIP1.1, putative [Ricinus communis]
2 Hb_003435_060 0.1675736279 - - carbonic anhydrase, putative [Ricinus communis]
3 Hb_000300_130 0.2254752587 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
4 Hb_001045_050 0.2282611057 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
5 Hb_001101_030 0.2356750124 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
6 Hb_183623_010 0.2456824314 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_000140_160 0.2531409822 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
8 Hb_001776_190 0.2553316244 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
9 Hb_001206_090 0.2652552451 - - pyruvate decarboxylase [Hevea brasiliensis]
10 Hb_105328_030 0.2715764593 - - Putative retroelement [Oryza sativa Japonica Group]
11 Hb_003106_120 0.2767469663 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
12 Hb_031527_060 0.2829497776 - - glutamate decarboxylase, putative [Ricinus communis]
13 Hb_026527_020 0.2868948189 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
14 Hb_000152_810 0.2879415955 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
15 Hb_007101_290 0.2905982411 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
16 Hb_080147_100 0.29091241 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
17 Hb_002284_190 0.2911462236 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
18 Hb_070277_010 0.2912986253 - - PREDICTED: purine permease 3-like [Jatropha curcas]
19 Hb_001079_020 0.2936774626 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
20 Hb_007101_230 0.2990765141 - - leucine rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008014_030 Hb_008014_030 Hb_003435_060 Hb_003435_060 Hb_008014_030--Hb_003435_060 Hb_000300_130 Hb_000300_130 Hb_008014_030--Hb_000300_130 Hb_001045_050 Hb_001045_050 Hb_008014_030--Hb_001045_050 Hb_001101_030 Hb_001101_030 Hb_008014_030--Hb_001101_030 Hb_183623_010 Hb_183623_010 Hb_008014_030--Hb_183623_010 Hb_000140_160 Hb_000140_160 Hb_008014_030--Hb_000140_160 Hb_003435_060--Hb_001045_050 Hb_003435_060--Hb_000300_130 Hb_024621_030 Hb_024621_030 Hb_003435_060--Hb_024621_030 Hb_003106_120 Hb_003106_120 Hb_003435_060--Hb_003106_120 Hb_001720_060 Hb_001720_060 Hb_003435_060--Hb_001720_060 Hb_031527_060 Hb_031527_060 Hb_000300_130--Hb_031527_060 Hb_009545_020 Hb_009545_020 Hb_000300_130--Hb_009545_020 Hb_000165_210 Hb_000165_210 Hb_000300_130--Hb_000165_210 Hb_001206_090 Hb_001206_090 Hb_000300_130--Hb_001206_090 Hb_000300_130--Hb_183623_010 Hb_001148_030 Hb_001148_030 Hb_000300_130--Hb_001148_030 Hb_001045_050--Hb_000140_160 Hb_001045_050--Hb_001101_030 Hb_002006_140 Hb_002006_140 Hb_001045_050--Hb_002006_140 Hb_000500_110 Hb_000500_110 Hb_001045_050--Hb_000500_110 Hb_000597_110 Hb_000597_110 Hb_001045_050--Hb_000597_110 Hb_004855_050 Hb_004855_050 Hb_001101_030--Hb_004855_050 Hb_000256_100 Hb_000256_100 Hb_001101_030--Hb_000256_100 Hb_009230_040 Hb_009230_040 Hb_001101_030--Hb_009230_040 Hb_000152_810 Hb_000152_810 Hb_001101_030--Hb_000152_810 Hb_002498_040 Hb_002498_040 Hb_001101_030--Hb_002498_040 Hb_001355_130 Hb_001355_130 Hb_183623_010--Hb_001355_130 Hb_000297_020 Hb_000297_020 Hb_183623_010--Hb_000297_020 Hb_001946_030 Hb_001946_030 Hb_183623_010--Hb_001946_030 Hb_138710_010 Hb_138710_010 Hb_183623_010--Hb_138710_010 Hb_094437_060 Hb_094437_060 Hb_183623_010--Hb_094437_060 Hb_027445_090 Hb_027445_090 Hb_000140_160--Hb_027445_090 Hb_000140_160--Hb_000256_100 Hb_000140_160--Hb_000500_110 Hb_001190_060 Hb_001190_060 Hb_000140_160--Hb_001190_060 Hb_000007_110 Hb_000007_110 Hb_000140_160--Hb_000007_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200124 0.373638 0.0307778 0.132359 0 0.0176082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.432039 0.33305 1.41623 0

CAGE analysis