Hb_008014_070

Information

Type -
Description -
Location Contig8014: 104191-108821
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008014_070 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_006061_010 0.222606763 - - PREDICTED: phytosulfokines 4-like [Populus euphratica]
3 Hb_020096_020 0.2322701464 - - -
4 Hb_001799_080 0.2439504513 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
5 Hb_000120_120 0.2547072257 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
6 Hb_163950_010 0.2551730068 - - -
7 Hb_002890_250 0.258974027 - - PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
8 Hb_000638_020 0.2597673975 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
9 Hb_000684_370 0.2600457685 - - -
10 Hb_013818_060 0.265035733 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
11 Hb_148122_010 0.2708438404 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
12 Hb_001766_100 0.2759625681 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_004460_010 0.2779874695 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
14 Hb_118419_030 0.2797156229 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
15 Hb_027892_010 0.2852142118 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
16 Hb_014549_020 0.2904418709 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
17 Hb_000249_130 0.2938202983 - - hypothetical protein RCOM_0254640 [Ricinus communis]
18 Hb_001437_240 0.2948668464 - - -
19 Hb_009812_020 0.2967385648 - - -
20 Hb_003069_020 0.2970627304 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008014_070 Hb_008014_070 Hb_006061_010 Hb_006061_010 Hb_008014_070--Hb_006061_010 Hb_020096_020 Hb_020096_020 Hb_008014_070--Hb_020096_020 Hb_001799_080 Hb_001799_080 Hb_008014_070--Hb_001799_080 Hb_000120_120 Hb_000120_120 Hb_008014_070--Hb_000120_120 Hb_163950_010 Hb_163950_010 Hb_008014_070--Hb_163950_010 Hb_002890_250 Hb_002890_250 Hb_008014_070--Hb_002890_250 Hb_027892_010 Hb_027892_010 Hb_006061_010--Hb_027892_010 Hb_004705_030 Hb_004705_030 Hb_006061_010--Hb_004705_030 Hb_019654_080 Hb_019654_080 Hb_006061_010--Hb_019654_080 Hb_013818_060 Hb_013818_060 Hb_006061_010--Hb_013818_060 Hb_006061_010--Hb_000120_120 Hb_007590_060 Hb_007590_060 Hb_020096_020--Hb_007590_060 Hb_020096_020--Hb_001799_080 Hb_159679_010 Hb_159679_010 Hb_020096_020--Hb_159679_010 Hb_001638_210 Hb_001638_210 Hb_020096_020--Hb_001638_210 Hb_020096_020--Hb_027892_010 Hb_004460_010 Hb_004460_010 Hb_001799_080--Hb_004460_010 Hb_001799_080--Hb_000120_120 Hb_000637_120 Hb_000637_120 Hb_001799_080--Hb_000637_120 Hb_001799_080--Hb_013818_060 Hb_000120_120--Hb_013818_060 Hb_000120_120--Hb_027892_010 Hb_000249_130 Hb_000249_130 Hb_000120_120--Hb_000249_130 Hb_000120_650 Hb_000120_650 Hb_000120_120--Hb_000120_650 Hb_004871_050 Hb_004871_050 Hb_000120_120--Hb_004871_050 Hb_000249_090 Hb_000249_090 Hb_000120_120--Hb_000249_090 Hb_000749_250 Hb_000749_250 Hb_163950_010--Hb_000749_250 Hb_001437_240 Hb_001437_240 Hb_163950_010--Hb_001437_240 Hb_143629_090 Hb_143629_090 Hb_163950_010--Hb_143629_090 Hb_000193_250 Hb_000193_250 Hb_163950_010--Hb_000193_250 Hb_004882_020 Hb_004882_020 Hb_163950_010--Hb_004882_020 Hb_009812_020 Hb_009812_020 Hb_163950_010--Hb_009812_020 Hb_000988_040 Hb_000988_040 Hb_002890_250--Hb_000988_040 Hb_001198_050 Hb_001198_050 Hb_002890_250--Hb_001198_050 Hb_000638_020 Hb_000638_020 Hb_002890_250--Hb_000638_020 Hb_000684_370 Hb_000684_370 Hb_002890_250--Hb_000684_370 Hb_004907_130 Hb_004907_130 Hb_002890_250--Hb_004907_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0185051 0 0 0 0.0173145 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.010479 0.00824665 0.0475336 0.00653169 0

CAGE analysis