Hb_008014_080

Information

Type -
Description -
Location Contig8014: 124406-126449
Sequence    

Annotation

kegg
ID brp:103848614
description uncharacterized LOC103848614
nr
ID XP_009123737.1
description PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
swissprot
ID -
description -
trembl
ID B9RNJ6
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1339580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008014_080 0.0 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
2 Hb_000212_340 0.0010958545 - - conserved hypothetical protein [Ricinus communis]
3 Hb_072639_010 0.0010998613 - - JHL22C18.10 [Jatropha curcas]
4 Hb_000053_090 0.0012726592 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
5 Hb_000200_260 0.0049892244 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
6 Hb_000445_340 0.0051281921 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003866_010 0.0139246781 - - Polyprotein, putative [Solanum demissum]
8 Hb_003492_030 0.0671759065 - - -
9 Hb_000163_120 0.0977818402 - - -
10 Hb_000465_200 0.1327150585 - - PREDICTED: protein NSP-INTERACTING KINASE 1 [Jatropha curcas]
11 Hb_002001_040 0.1391789654 - - hypothetical protein CISIN_1g044945mg, partial [Citrus sinensis]
12 Hb_000207_410 0.1409132065 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000537_110 0.1416703556 - - -
14 Hb_001184_120 0.148666669 - - hypothetical protein CICLE_v10025281mg [Citrus clementina]
15 Hb_001433_060 0.1514544424 - - hypothetical protein JCGZ_23291 [Jatropha curcas]
16 Hb_000680_040 0.2359650093 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
17 Hb_109358_010 0.3221847055 - - -
18 Hb_040948_020 0.3290046434 - - -
19 Hb_034589_010 0.3302264723 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
20 Hb_001825_050 0.3485868405 - - -

Gene co-expression network

sample Hb_008014_080 Hb_008014_080 Hb_000212_340 Hb_000212_340 Hb_008014_080--Hb_000212_340 Hb_072639_010 Hb_072639_010 Hb_008014_080--Hb_072639_010 Hb_000053_090 Hb_000053_090 Hb_008014_080--Hb_000053_090 Hb_000200_260 Hb_000200_260 Hb_008014_080--Hb_000200_260 Hb_000445_340 Hb_000445_340 Hb_008014_080--Hb_000445_340 Hb_003866_010 Hb_003866_010 Hb_008014_080--Hb_003866_010 Hb_000212_340--Hb_072639_010 Hb_000212_340--Hb_000053_090 Hb_000212_340--Hb_000200_260 Hb_000212_340--Hb_000445_340 Hb_000212_340--Hb_003866_010 Hb_072639_010--Hb_000053_090 Hb_072639_010--Hb_000445_340 Hb_072639_010--Hb_000200_260 Hb_072639_010--Hb_003866_010 Hb_000053_090--Hb_000445_340 Hb_000053_090--Hb_000200_260 Hb_000053_090--Hb_003866_010 Hb_000200_260--Hb_000445_340 Hb_000200_260--Hb_003866_010 Hb_000445_340--Hb_003866_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.160571 0 0.199626 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis