Hb_008020_010

Information

Type -
Description -
Location Contig8020: 9847-15906
Sequence    

Annotation

kegg
ID vvi:100260111
description ankyrin repeat-containing protein At3g12360
nr
ID XP_012074852.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067KUP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09007 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58849: 10495-12160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008020_010 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
2 Hb_002917_030 0.0929087347 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
3 Hb_001951_090 0.1205723717 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_001596_040 0.1236771998 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
5 Hb_001952_110 0.1255098634 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
6 Hb_008225_100 0.1267937184 - - -
7 Hb_002917_020 0.1428768541 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
8 Hb_002171_070 0.1464488584 desease resistance Gene Name: NB-ARC NBS-LRR resistance gene-like protein ARGH30 [Populus trichocarpa]
9 Hb_001489_030 0.1507315594 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
10 Hb_005000_220 0.1559988533 - - gulonolactone oxidase, putative [Ricinus communis]
11 Hb_002400_250 0.163239061 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_012019_020 0.1645306483 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
13 Hb_003085_050 0.1648977703 - - Polygalacturonase non-catalytic subunit AroGP3 precursor, putative [Ricinus communis]
14 Hb_157122_010 0.1659136777 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
15 Hb_006106_020 0.1663882824 - - ring finger protein, putative [Ricinus communis]
16 Hb_002553_080 0.1665667502 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096-like [Eucalyptus grandis]
17 Hb_000043_080 0.1689040885 - - lipid binding protein, putative [Ricinus communis]
18 Hb_000556_200 0.1690955549 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
19 Hb_003677_010 0.1696617768 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
20 Hb_005550_070 0.1702844951 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Populus euphratica]

Gene co-expression network

sample Hb_008020_010 Hb_008020_010 Hb_002917_030 Hb_002917_030 Hb_008020_010--Hb_002917_030 Hb_001951_090 Hb_001951_090 Hb_008020_010--Hb_001951_090 Hb_001596_040 Hb_001596_040 Hb_008020_010--Hb_001596_040 Hb_001952_110 Hb_001952_110 Hb_008020_010--Hb_001952_110 Hb_008225_100 Hb_008225_100 Hb_008020_010--Hb_008225_100 Hb_002917_020 Hb_002917_020 Hb_008020_010--Hb_002917_020 Hb_001489_030 Hb_001489_030 Hb_002917_030--Hb_001489_030 Hb_002917_030--Hb_001596_040 Hb_002917_030--Hb_002917_020 Hb_000043_080 Hb_000043_080 Hb_002917_030--Hb_000043_080 Hb_012053_030 Hb_012053_030 Hb_002917_030--Hb_012053_030 Hb_001951_090--Hb_001952_110 Hb_001951_090--Hb_002917_020 Hb_000917_150 Hb_000917_150 Hb_001951_090--Hb_000917_150 Hb_001951_090--Hb_002917_030 Hb_012019_020 Hb_012019_020 Hb_001951_090--Hb_012019_020 Hb_002171_070 Hb_002171_070 Hb_001596_040--Hb_002171_070 Hb_001596_040--Hb_012019_020 Hb_003086_200 Hb_003086_200 Hb_001596_040--Hb_003086_200 Hb_004931_060 Hb_004931_060 Hb_001596_040--Hb_004931_060 Hb_000556_200 Hb_000556_200 Hb_001596_040--Hb_000556_200 Hb_001952_110--Hb_012019_020 Hb_001952_110--Hb_001596_040 Hb_000101_050 Hb_000101_050 Hb_001952_110--Hb_000101_050 Hb_005550_070 Hb_005550_070 Hb_001952_110--Hb_005550_070 Hb_008225_100--Hb_002917_030 Hb_005000_220 Hb_005000_220 Hb_008225_100--Hb_005000_220 Hb_008225_100--Hb_001951_090 Hb_006106_020 Hb_006106_020 Hb_008225_100--Hb_006106_020 Hb_002553_080 Hb_002553_080 Hb_008225_100--Hb_002553_080 Hb_002917_020--Hb_004931_060 Hb_186298_010 Hb_186298_010 Hb_002917_020--Hb_186298_010 Hb_002917_020--Hb_005550_070 Hb_011628_030 Hb_011628_030 Hb_002917_020--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_002917_020--Hb_047163_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113623 7.96642 1.59548 0.249997 0.0290499 0.0672911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229762 0.216938 0.137068 11.8763 0.114562

CAGE analysis