Hb_008020_020

Information

Type -
Description -
Location Contig8020: 37408-40356
Sequence    

Annotation

kegg
ID rcu:RCOM_0879580
description ankyrin repeat-containing protein, putative
nr
ID XP_012074850.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A067KKN2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09006 PE=4 SV=1
Gene Ontology
ID GO:0005783
description ankyrin repeat-containing protein at5g02620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58850: 37609-40355 , PASA_asmbl_58851: 37672-40355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008020_020 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
2 Hb_000221_230 0.1075071034 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
3 Hb_090782_010 0.1159496635 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
4 Hb_015026_040 0.1231869388 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
5 Hb_047442_010 0.1279688266 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
6 Hb_004586_130 0.1282338917 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002876_070 0.1329838828 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
8 Hb_161901_020 0.1355162582 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
9 Hb_000069_730 0.1377480207 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
10 Hb_005394_010 0.1431973305 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
11 Hb_033930_010 0.1475666025 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
12 Hb_011930_120 0.149476512 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
13 Hb_000622_210 0.1500735647 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
14 Hb_000272_110 0.1511629423 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
15 Hb_001246_160 0.154752803 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
16 Hb_000680_180 0.1568938287 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
17 Hb_002151_130 0.1575845318 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
18 Hb_061908_030 0.1579673517 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
19 Hb_005941_020 0.1621190341 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
20 Hb_001989_060 0.1639085871 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_008020_020 Hb_008020_020 Hb_000221_230 Hb_000221_230 Hb_008020_020--Hb_000221_230 Hb_090782_010 Hb_090782_010 Hb_008020_020--Hb_090782_010 Hb_015026_040 Hb_015026_040 Hb_008020_020--Hb_015026_040 Hb_047442_010 Hb_047442_010 Hb_008020_020--Hb_047442_010 Hb_004586_130 Hb_004586_130 Hb_008020_020--Hb_004586_130 Hb_002876_070 Hb_002876_070 Hb_008020_020--Hb_002876_070 Hb_000221_230--Hb_015026_040 Hb_000221_230--Hb_004586_130 Hb_005394_010 Hb_005394_010 Hb_000221_230--Hb_005394_010 Hb_000680_180 Hb_000680_180 Hb_000221_230--Hb_000680_180 Hb_041895_040 Hb_041895_040 Hb_000221_230--Hb_041895_040 Hb_000454_140 Hb_000454_140 Hb_090782_010--Hb_000454_140 Hb_000163_230 Hb_000163_230 Hb_090782_010--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_090782_010--Hb_000045_260 Hb_161901_020 Hb_161901_020 Hb_090782_010--Hb_161901_020 Hb_090782_010--Hb_015026_040 Hb_015026_040--Hb_041895_040 Hb_015026_040--Hb_005394_010 Hb_000445_100 Hb_000445_100 Hb_015026_040--Hb_000445_100 Hb_011671_110 Hb_011671_110 Hb_047442_010--Hb_011671_110 Hb_002965_070 Hb_002965_070 Hb_047442_010--Hb_002965_070 Hb_047442_010--Hb_005394_010 Hb_000317_190 Hb_000317_190 Hb_047442_010--Hb_000317_190 Hb_000111_390 Hb_000111_390 Hb_047442_010--Hb_000111_390 Hb_001894_160 Hb_001894_160 Hb_047442_010--Hb_001894_160 Hb_000283_100 Hb_000283_100 Hb_004586_130--Hb_000283_100 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_010126_030 Hb_010126_030 Hb_004586_130--Hb_010126_030 Hb_004586_130--Hb_002876_070 Hb_001989_060 Hb_001989_060 Hb_004586_130--Hb_001989_060 Hb_003207_100 Hb_003207_100 Hb_002876_070--Hb_003207_100 Hb_000272_110 Hb_000272_110 Hb_002876_070--Hb_000272_110 Hb_011930_120 Hb_011930_120 Hb_002876_070--Hb_011930_120 Hb_001246_160 Hb_001246_160 Hb_002876_070--Hb_001246_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.7919 229.17 208.091 54.9127 10.4129 19.8648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13 19.7704 15.1287 21.9705 26.6929

CAGE analysis