Hb_008021_020

Information

Type transcription factor
Description TF Family: GRF
Location Contig8021: 29221-31649
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00780g
description POPTRDRAFT_774124; hypothetical protein
nr
ID XP_002320668.1
description hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
swissprot
ID O81001
description Growth-regulating factor 1 OS=Arabidopsis thaliana GN=GRF1 PE=1 SV=1
trembl
ID B9IBM4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s00780g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008021_020 0.0 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
2 Hb_007289_010 0.0001521801 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000283_170 0.00031369 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000856_220 0.007453935 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
5 Hb_002793_010 0.0078739435 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
6 Hb_185830_040 0.0083207098 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
7 Hb_000319_100 0.008701791 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
8 Hb_001587_130 0.0090359256 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
9 Hb_004000_030 0.0094867337 - - putative retrotransposon protein [Phyllostachys edulis]
10 Hb_181803_010 0.0095605378 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
11 Hb_000156_020 0.0101039438 - - PREDICTED: la-related protein 6A [Jatropha curcas]
12 Hb_003176_030 0.0101039438 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Solanum lycopersicum]
13 Hb_183433_020 0.010768178 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
14 Hb_170365_010 0.0113694719 - - Retrotransposon protein, putative [Theobroma cacao]
15 Hb_052135_010 0.0114693995 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
16 Hb_000940_090 0.0119535652 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
17 Hb_005714_080 0.0132456195 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
18 Hb_007227_010 0.0176232246 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
19 Hb_042666_010 0.0198585748 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_000023_040 0.0271582102 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_008021_020 Hb_008021_020 Hb_007289_010 Hb_007289_010 Hb_008021_020--Hb_007289_010 Hb_000283_170 Hb_000283_170 Hb_008021_020--Hb_000283_170 Hb_000856_220 Hb_000856_220 Hb_008021_020--Hb_000856_220 Hb_002793_010 Hb_002793_010 Hb_008021_020--Hb_002793_010 Hb_185830_040 Hb_185830_040 Hb_008021_020--Hb_185830_040 Hb_000319_100 Hb_000319_100 Hb_008021_020--Hb_000319_100 Hb_007289_010--Hb_000283_170 Hb_007289_010--Hb_000856_220 Hb_007289_010--Hb_002793_010 Hb_007289_010--Hb_185830_040 Hb_007289_010--Hb_000319_100 Hb_000283_170--Hb_000856_220 Hb_000283_170--Hb_002793_010 Hb_000283_170--Hb_000319_100 Hb_000283_170--Hb_185830_040 Hb_000856_220--Hb_002793_010 Hb_000856_220--Hb_185830_040 Hb_004000_030 Hb_004000_030 Hb_000856_220--Hb_004000_030 Hb_181803_010 Hb_181803_010 Hb_000856_220--Hb_181803_010 Hb_183433_020 Hb_183433_020 Hb_000856_220--Hb_183433_020 Hb_170365_010 Hb_170365_010 Hb_000856_220--Hb_170365_010 Hb_002793_010--Hb_185830_040 Hb_002793_010--Hb_004000_030 Hb_002793_010--Hb_181803_010 Hb_002793_010--Hb_183433_020 Hb_002793_010--Hb_170365_010 Hb_185830_040--Hb_004000_030 Hb_185830_040--Hb_181803_010 Hb_185830_040--Hb_183433_020 Hb_185830_040--Hb_170365_010 Hb_001587_130 Hb_001587_130 Hb_000319_100--Hb_001587_130 Hb_000156_020 Hb_000156_020 Hb_000319_100--Hb_000156_020 Hb_003176_030 Hb_003176_030 Hb_000319_100--Hb_003176_030 Hb_000940_090 Hb_000940_090 Hb_000319_100--Hb_000940_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0109591 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00985274 0

CAGE analysis