Hb_008021_050

Information

Type -
Description -
Location Contig8021: 62202-63017
Sequence    

Annotation

kegg
ID rcu:RCOM_0860020
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002530612.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q8SU52
description Probable glucose-repressible alcohol dehydrogenase transcriptional effector homolog OS=Encephalitozoon cuniculi (strain GB-M1) GN=CCR4 PE=3 SV=1
trembl
ID B9SX93
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0860020 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable inactive receptor kinase at1g27190

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58860: 61974-62092 , PASA_asmbl_58861: 62163-62830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008021_050 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_003607_080 0.0676739548 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
3 Hb_003466_010 0.0849266546 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
4 Hb_000093_010 0.086537922 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
5 Hb_001688_030 0.0880685558 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
6 Hb_120040_010 0.0885203126 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_007919_010 0.0905235187 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000614_120 0.0950793934 - - hypothetical protein JCGZ_17923 [Jatropha curcas]
9 Hb_005648_020 0.1001577904 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
10 Hb_000020_200 0.1021085765 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
11 Hb_008731_010 0.1026272162 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
12 Hb_002384_030 0.1043457899 - - conserved hypothetical protein [Ricinus communis]
13 Hb_122951_010 0.1049099463 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
14 Hb_005215_050 0.10833456 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
15 Hb_170077_020 0.1101309412 - - PREDICTED: probable serine incorporator [Jatropha curcas]
16 Hb_000849_030 0.1128150705 - - PREDICTED: fimbrin-2 [Jatropha curcas]
17 Hb_178049_010 0.1153532135 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
18 Hb_000098_230 0.1165275024 - - Potassium channel AKT2/3, putative [Ricinus communis]
19 Hb_002522_040 0.1174212973 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
20 Hb_001417_090 0.119478975 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]

Gene co-expression network

sample Hb_008021_050 Hb_008021_050 Hb_003607_080 Hb_003607_080 Hb_008021_050--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_008021_050--Hb_003466_010 Hb_000093_010 Hb_000093_010 Hb_008021_050--Hb_000093_010 Hb_001688_030 Hb_001688_030 Hb_008021_050--Hb_001688_030 Hb_120040_010 Hb_120040_010 Hb_008021_050--Hb_120040_010 Hb_007919_010 Hb_007919_010 Hb_008021_050--Hb_007919_010 Hb_003607_080--Hb_000093_010 Hb_005648_020 Hb_005648_020 Hb_003607_080--Hb_005648_020 Hb_005215_050 Hb_005215_050 Hb_003607_080--Hb_005215_050 Hb_170077_020 Hb_170077_020 Hb_003607_080--Hb_170077_020 Hb_003607_080--Hb_003466_010 Hb_003466_010--Hb_005648_020 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_036520_030 Hb_036520_030 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050 Hb_000093_010--Hb_005648_020 Hb_000395_310 Hb_000395_310 Hb_000093_010--Hb_000395_310 Hb_000093_010--Hb_001688_030 Hb_154038_040 Hb_154038_040 Hb_001688_030--Hb_154038_040 Hb_001360_020 Hb_001360_020 Hb_001688_030--Hb_001360_020 Hb_002384_030 Hb_002384_030 Hb_001688_030--Hb_002384_030 Hb_133492_010 Hb_133492_010 Hb_001688_030--Hb_133492_010 Hb_001417_090 Hb_001417_090 Hb_120040_010--Hb_001417_090 Hb_001856_130 Hb_001856_130 Hb_120040_010--Hb_001856_130 Hb_000149_020 Hb_000149_020 Hb_120040_010--Hb_000149_020 Hb_009225_070 Hb_009225_070 Hb_120040_010--Hb_009225_070 Hb_002522_040 Hb_002522_040 Hb_120040_010--Hb_002522_040 Hb_180088_010 Hb_180088_010 Hb_007919_010--Hb_180088_010 Hb_000098_230 Hb_000098_230 Hb_007919_010--Hb_000098_230 Hb_006351_050 Hb_006351_050 Hb_007919_010--Hb_006351_050 Hb_000422_060 Hb_000422_060 Hb_007919_010--Hb_000422_060 Hb_001500_020 Hb_001500_020 Hb_007919_010--Hb_001500_020 Hb_001579_160 Hb_001579_160 Hb_007919_010--Hb_001579_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.19248 2.41395 12.6904 0 0.0342831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.878203 2.59929

CAGE analysis