Hb_008033_040

Information

Type -
Description -
Location Contig8033: 79788-92147
Sequence    

Annotation

kegg
ID rcu:RCOM_1419660
description DNA-damage-inducible protein f, putative
nr
ID XP_012067153.1
description PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9SVE7
description MATE efflux family protein 3, chloroplastic OS=Arabidopsis thaliana GN=DTX45 PE=2 SV=2
trembl
ID A0A067L0R0
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_03080 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58930: 79929-90168 , PASA_asmbl_58931: 82808-83085 , PASA_asmbl_58932: 90283-98010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008033_040 0.0 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
2 Hb_001304_110 0.0668352811 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
3 Hb_003943_110 0.0685975535 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
4 Hb_027073_020 0.0707222745 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
5 Hb_001716_040 0.0719963954 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
6 Hb_001347_060 0.0732010874 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_000363_310 0.0749033299 - - DNA topoisomerase type I, putative [Ricinus communis]
8 Hb_001789_110 0.0750685642 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000406_200 0.0752374058 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
10 Hb_000640_040 0.0756161357 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_188281_040 0.0793249824 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
12 Hb_010068_080 0.0802518409 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
13 Hb_015675_040 0.0806099163 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
14 Hb_000352_310 0.0816065363 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
15 Hb_005116_050 0.0817809507 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_001124_130 0.0820669688 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
17 Hb_000635_060 0.0829364624 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
18 Hb_005976_080 0.08313592 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
19 Hb_005582_040 0.0831436381 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
20 Hb_000347_430 0.0832559353 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]

Gene co-expression network

sample Hb_008033_040 Hb_008033_040 Hb_001304_110 Hb_001304_110 Hb_008033_040--Hb_001304_110 Hb_003943_110 Hb_003943_110 Hb_008033_040--Hb_003943_110 Hb_027073_020 Hb_027073_020 Hb_008033_040--Hb_027073_020 Hb_001716_040 Hb_001716_040 Hb_008033_040--Hb_001716_040 Hb_001347_060 Hb_001347_060 Hb_008033_040--Hb_001347_060 Hb_000363_310 Hb_000363_310 Hb_008033_040--Hb_000363_310 Hb_005582_040 Hb_005582_040 Hb_001304_110--Hb_005582_040 Hb_010068_080 Hb_010068_080 Hb_001304_110--Hb_010068_080 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001999_290 Hb_001999_290 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110 Hb_001157_240 Hb_001157_240 Hb_003943_110--Hb_001157_240 Hb_003943_110--Hb_001716_040 Hb_003943_110--Hb_005582_040 Hb_003943_110--Hb_027073_020 Hb_001998_240 Hb_001998_240 Hb_003943_110--Hb_001998_240 Hb_001789_110 Hb_001789_110 Hb_027073_020--Hb_001789_110 Hb_001999_310 Hb_001999_310 Hb_027073_020--Hb_001999_310 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_122968_010 Hb_122968_010 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_000640_040 Hb_000640_040 Hb_001716_040--Hb_000640_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_000347_430 Hb_000347_430 Hb_001347_060--Hb_000347_430 Hb_004108_160 Hb_004108_160 Hb_001347_060--Hb_004108_160 Hb_001936_090 Hb_001936_090 Hb_001347_060--Hb_001936_090 Hb_001347_060--Hb_000363_310 Hb_001347_060--Hb_000406_200 Hb_000363_310--Hb_000347_430 Hb_001377_190 Hb_001377_190 Hb_000363_310--Hb_001377_190 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_000111_170 Hb_000111_170 Hb_000363_310--Hb_000111_170 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_000749_010 Hb_000749_010 Hb_000363_310--Hb_000749_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0892 5.24627 5.82765 5.07676 4.30283 4.36274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.71087 6.97132 5.80982 6.74864 9.24546

CAGE analysis