Hb_008053_020

Information

Type -
Description -
Location Contig8053: 22552-25745
Sequence    

Annotation

kegg
ID rcu:RCOM_1615260
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002511861.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9LW32
description Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1
trembl
ID B9RDS2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1615260 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008053_020 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_011794_020 0.2250207096 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_009189_030 0.2395484755 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
4 Hb_009686_010 0.239776749 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
5 Hb_027255_010 0.2489392404 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
6 Hb_125861_010 0.2503636844 - - hypothetical protein RCOM_0703970 [Ricinus communis]
7 Hb_000853_290 0.2543051897 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
8 Hb_171273_010 0.2544619343 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
9 Hb_001899_010 0.254659079 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
10 Hb_006634_010 0.2559200782 - - -
11 Hb_002326_060 0.2764500548 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
12 Hb_003529_220 0.2777091767 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
13 Hb_077211_010 0.2792836857 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
14 Hb_005883_040 0.2796328353 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
15 Hb_000035_310 0.2830476225 - - hypothetical protein POPTR_0006s28170g [Populus trichocarpa]
16 Hb_007137_060 0.2850114886 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
17 Hb_006960_030 0.2871808789 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
18 Hb_001951_120 0.2879782706 - - -
19 Hb_001159_210 0.2899748334 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
20 Hb_009189_060 0.2921618462 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008053_020 Hb_008053_020 Hb_011794_020 Hb_011794_020 Hb_008053_020--Hb_011794_020 Hb_009189_030 Hb_009189_030 Hb_008053_020--Hb_009189_030 Hb_009686_010 Hb_009686_010 Hb_008053_020--Hb_009686_010 Hb_027255_010 Hb_027255_010 Hb_008053_020--Hb_027255_010 Hb_125861_010 Hb_125861_010 Hb_008053_020--Hb_125861_010 Hb_000853_290 Hb_000853_290 Hb_008053_020--Hb_000853_290 Hb_115578_010 Hb_115578_010 Hb_011794_020--Hb_115578_010 Hb_130134_030 Hb_130134_030 Hb_011794_020--Hb_130134_030 Hb_002249_110 Hb_002249_110 Hb_011794_020--Hb_002249_110 Hb_130134_020 Hb_130134_020 Hb_011794_020--Hb_130134_020 Hb_001385_090 Hb_001385_090 Hb_011794_020--Hb_001385_090 Hb_003222_010 Hb_003222_010 Hb_009189_030--Hb_003222_010 Hb_009189_030--Hb_027255_010 Hb_000205_070 Hb_000205_070 Hb_009189_030--Hb_000205_070 Hb_009189_030--Hb_000853_290 Hb_004631_160 Hb_004631_160 Hb_009189_030--Hb_004631_160 Hb_003337_070 Hb_003337_070 Hb_009189_030--Hb_003337_070 Hb_009686_010--Hb_027255_010 Hb_114868_010 Hb_114868_010 Hb_009686_010--Hb_114868_010 Hb_001899_010 Hb_001899_010 Hb_009686_010--Hb_001899_010 Hb_003529_220 Hb_003529_220 Hb_009686_010--Hb_003529_220 Hb_005799_030 Hb_005799_030 Hb_009686_010--Hb_005799_030 Hb_003529_210 Hb_003529_210 Hb_009686_010--Hb_003529_210 Hb_027255_010--Hb_000205_070 Hb_027255_010--Hb_114868_010 Hb_002326_060 Hb_002326_060 Hb_027255_010--Hb_002326_060 Hb_027255_010--Hb_000853_290 Hb_140595_010 Hb_140595_010 Hb_125861_010--Hb_140595_010 Hb_012867_010 Hb_012867_010 Hb_125861_010--Hb_012867_010 Hb_101020_010 Hb_101020_010 Hb_125861_010--Hb_101020_010 Hb_000580_130 Hb_000580_130 Hb_125861_010--Hb_000580_130 Hb_107847_010 Hb_107847_010 Hb_125861_010--Hb_107847_010 Hb_089889_020 Hb_089889_020 Hb_125861_010--Hb_089889_020 Hb_006745_020 Hb_006745_020 Hb_000853_290--Hb_006745_020 Hb_000853_300 Hb_000853_300 Hb_000853_290--Hb_000853_300 Hb_182807_020 Hb_182807_020 Hb_000853_290--Hb_182807_020 Hb_025194_030 Hb_025194_030 Hb_000853_290--Hb_025194_030 Hb_007044_010 Hb_007044_010 Hb_000853_290--Hb_007044_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0739694 0.0704223 0.094921 0.0180392 0.388961 0.431034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis