Hb_008053_040

Information

Type -
Description -
Location Contig8053: 37421-55061
Sequence    

Annotation

kegg
ID pxb:103932267
description mediator of RNA polymerase II transcription subunit 12-like
nr
ID XP_009340104.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
swissprot
ID H3K2Y6
description Mediator of RNA polymerase II transcription subunit 12 OS=Arabidopsis thaliana GN=MED12 PE=1 SV=1
trembl
ID K7LG47
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59015: 37422-41920 , PASA_asmbl_59017: 43972-50636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008053_040 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
2 Hb_007575_080 0.0593771983 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
3 Hb_003805_040 0.06371749 - - Sacsin [Glycine soja]
4 Hb_005186_040 0.0648264473 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
5 Hb_002521_020 0.0659313935 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
6 Hb_000665_230 0.0682421893 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
7 Hb_024185_010 0.0682478766 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
8 Hb_001648_020 0.0709473948 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
9 Hb_010180_060 0.0711391611 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
10 Hb_000261_150 0.0755663144 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001133_030 0.0770643988 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
12 Hb_000069_470 0.07731842 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
13 Hb_009486_170 0.0782727031 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
14 Hb_005486_030 0.0801583748 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
15 Hb_011689_030 0.0809054827 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
16 Hb_002909_120 0.0817528768 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
17 Hb_006117_080 0.0824112335 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
18 Hb_000321_150 0.0828466992 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
19 Hb_000599_190 0.0831935401 transcription factor TF Family: SNF2 DNA repair and recombination protein RAD26, putative [Ricinus communis]
20 Hb_001951_170 0.0837137972 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]

Gene co-expression network

sample Hb_008053_040 Hb_008053_040 Hb_007575_080 Hb_007575_080 Hb_008053_040--Hb_007575_080 Hb_003805_040 Hb_003805_040 Hb_008053_040--Hb_003805_040 Hb_005186_040 Hb_005186_040 Hb_008053_040--Hb_005186_040 Hb_002521_020 Hb_002521_020 Hb_008053_040--Hb_002521_020 Hb_000665_230 Hb_000665_230 Hb_008053_040--Hb_000665_230 Hb_024185_010 Hb_024185_010 Hb_008053_040--Hb_024185_010 Hb_007575_080--Hb_024185_010 Hb_006117_080 Hb_006117_080 Hb_007575_080--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_007575_080--Hb_000321_150 Hb_000661_130 Hb_000661_130 Hb_007575_080--Hb_000661_130 Hb_002780_010 Hb_002780_010 Hb_007575_080--Hb_002780_010 Hb_009486_170 Hb_009486_170 Hb_003805_040--Hb_009486_170 Hb_003805_040--Hb_000665_230 Hb_001133_030 Hb_001133_030 Hb_003805_040--Hb_001133_030 Hb_011202_020 Hb_011202_020 Hb_003805_040--Hb_011202_020 Hb_003805_040--Hb_002521_020 Hb_012244_020 Hb_012244_020 Hb_005186_040--Hb_012244_020 Hb_001648_020 Hb_001648_020 Hb_005186_040--Hb_001648_020 Hb_005186_040--Hb_002521_020 Hb_007441_160 Hb_007441_160 Hb_005186_040--Hb_007441_160 Hb_000672_040 Hb_000672_040 Hb_005186_040--Hb_000672_040 Hb_001377_100 Hb_001377_100 Hb_005186_040--Hb_001377_100 Hb_010180_060 Hb_010180_060 Hb_002521_020--Hb_010180_060 Hb_002521_020--Hb_001133_030 Hb_001124_050 Hb_001124_050 Hb_002521_020--Hb_001124_050 Hb_002521_020--Hb_009486_170 Hb_002521_020--Hb_001377_100 Hb_011689_030 Hb_011689_030 Hb_000665_230--Hb_011689_030 Hb_000665_230--Hb_009486_170 Hb_000176_100 Hb_000176_100 Hb_000665_230--Hb_000176_100 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_000720_150 Hb_000720_150 Hb_024185_010--Hb_000720_150 Hb_024185_010--Hb_006117_080 Hb_024185_010--Hb_000661_130 Hb_000703_130 Hb_000703_130 Hb_024185_010--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.10223 16.4721 4.97012 7.13419 7.89957 8.49119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18253 4.84981 7.43805 7.82205 12.8004

CAGE analysis