Hb_008054_030

Information

Type -
Description -
Location Contig8054: 43919-44269
Sequence    

Annotation

kegg
ID rcu:RCOM_0632480
description hypothetical protein
nr
ID XP_012072112.1
description PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
swissprot
ID Q1G3U8
description VQ motif-containing protein 1 OS=Arabidopsis thaliana GN=VQ1 PE=1 SV=1
trembl
ID A0A067KP20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04624 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008054_030 0.0 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
2 Hb_003339_010 0.0188899738 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
3 Hb_000028_190 0.0593961423 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
4 Hb_007163_100 0.0649748869 - - BnaC03g52280D [Brassica napus]
5 Hb_005762_010 0.0652682097 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
6 Hb_002150_090 0.0665986579 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
7 Hb_008221_200 0.0711729598 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
8 Hb_001117_050 0.0722216859 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
9 Hb_001674_010 0.073948522 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
10 Hb_004137_040 0.073954338 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
11 Hb_002066_110 0.0763159037 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
12 Hb_000392_110 0.0812133948 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_000718_060 0.0836258633 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
14 Hb_032920_020 0.0846403003 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
15 Hb_001032_020 0.0873044794 - - ankyrin repeat protein [Bruguiera gymnorhiza]
16 Hb_001095_020 0.0874146313 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
17 Hb_000230_300 0.0878416736 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
18 Hb_001545_020 0.0898858442 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
19 Hb_001766_130 0.090354646 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000483_450 0.0916372905 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_008054_030 Hb_008054_030 Hb_003339_010 Hb_003339_010 Hb_008054_030--Hb_003339_010 Hb_000028_190 Hb_000028_190 Hb_008054_030--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_008054_030--Hb_007163_100 Hb_005762_010 Hb_005762_010 Hb_008054_030--Hb_005762_010 Hb_002150_090 Hb_002150_090 Hb_008054_030--Hb_002150_090 Hb_008221_200 Hb_008221_200 Hb_008054_030--Hb_008221_200 Hb_003339_010--Hb_005762_010 Hb_003339_010--Hb_000028_190 Hb_003339_010--Hb_007163_100 Hb_003339_010--Hb_002150_090 Hb_004137_040 Hb_004137_040 Hb_003339_010--Hb_004137_040 Hb_000028_190--Hb_004137_040 Hb_000028_190--Hb_002150_090 Hb_000483_450 Hb_000483_450 Hb_000028_190--Hb_000483_450 Hb_001674_010 Hb_001674_010 Hb_000028_190--Hb_001674_010 Hb_000928_030 Hb_000928_030 Hb_000028_190--Hb_000928_030 Hb_007163_100--Hb_002150_090 Hb_012098_160 Hb_012098_160 Hb_007163_100--Hb_012098_160 Hb_007163_100--Hb_000028_190 Hb_001095_020 Hb_001095_020 Hb_007163_100--Hb_001095_020 Hb_000230_300 Hb_000230_300 Hb_005762_010--Hb_000230_300 Hb_000103_200 Hb_000103_200 Hb_005762_010--Hb_000103_200 Hb_009023_010 Hb_009023_010 Hb_005762_010--Hb_009023_010 Hb_005762_010--Hb_004137_040 Hb_002150_090--Hb_001095_020 Hb_002066_110 Hb_002066_110 Hb_002150_090--Hb_002066_110 Hb_002150_090--Hb_001674_010 Hb_000718_060 Hb_000718_060 Hb_008221_200--Hb_000718_060 Hb_002942_200 Hb_002942_200 Hb_008221_200--Hb_002942_200 Hb_009393_090 Hb_009393_090 Hb_008221_200--Hb_009393_090 Hb_001117_050 Hb_001117_050 Hb_008221_200--Hb_001117_050 Hb_008221_200--Hb_003339_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.59212 8.23549 12.3272 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.361853 8.53189

CAGE analysis