Hb_008054_050

Information

Type -
Description -
Location Contig8054: 70728-71016
Sequence    

Annotation

kegg
ID csv:101224807
description uncharacterized LOC101224807
nr
ID XP_011658293.1
description PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0KLZ9
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G523430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59031: 70139-71124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008054_050 0.0 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
2 Hb_145317_010 0.1353604692 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
3 Hb_004374_130 0.1381849797 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
4 Hb_161994_040 0.1493862969 - - -
5 Hb_000311_030 0.1522719827 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
6 Hb_002498_050 0.1571234582 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
7 Hb_001217_040 0.1611761986 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
8 Hb_065841_010 0.1654384062 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
9 Hb_009189_020 0.1694279218 - - PREDICTED: CASP-like protein 4B4 [Jatropha curcas]
10 Hb_005539_310 0.1750841658 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
11 Hb_001474_040 0.1778043718 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
12 Hb_002675_090 0.1794066992 - - conserved hypothetical protein [Ricinus communis]
13 Hb_118507_010 0.1844059808 - - hypothetical protein VITISV_019292 [Vitis vinifera]
14 Hb_106688_010 0.1844901716 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
15 Hb_013358_100 0.1851298374 - - unknown [Medicago truncatula]
16 Hb_009247_010 0.1853311478 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
17 Hb_009393_200 0.1859855381 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
18 Hb_066514_010 0.1888051288 - - hypothetical protein RCOM_0204720 [Ricinus communis]
19 Hb_000069_620 0.1890428746 - - serine-threonine protein kinase, putative [Ricinus communis]
20 Hb_009222_070 0.1904644509 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_008054_050 Hb_008054_050 Hb_145317_010 Hb_145317_010 Hb_008054_050--Hb_145317_010 Hb_004374_130 Hb_004374_130 Hb_008054_050--Hb_004374_130 Hb_161994_040 Hb_161994_040 Hb_008054_050--Hb_161994_040 Hb_000311_030 Hb_000311_030 Hb_008054_050--Hb_000311_030 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_009189_020 Hb_009189_020 Hb_004374_130--Hb_009189_020 Hb_004374_130--Hb_009393_200 Hb_009222_070 Hb_009222_070 Hb_004374_130--Hb_009222_070 Hb_083628_010 Hb_083628_010 Hb_004374_130--Hb_083628_010 Hb_161994_040--Hb_000311_030 Hb_065841_010 Hb_065841_010 Hb_161994_040--Hb_065841_010 Hb_013358_100 Hb_013358_100 Hb_161994_040--Hb_013358_100 Hb_161994_040--Hb_145317_010 Hb_006642_030 Hb_006642_030 Hb_161994_040--Hb_006642_030 Hb_000311_030--Hb_006642_030 Hb_000311_030--Hb_065841_010 Hb_068569_010 Hb_068569_010 Hb_000311_030--Hb_068569_010 Hb_000311_030--Hb_013358_100 Hb_000230_180 Hb_000230_180 Hb_002498_050--Hb_000230_180 Hb_028707_080 Hb_028707_080 Hb_002498_050--Hb_028707_080 Hb_002192_030 Hb_002192_030 Hb_002498_050--Hb_002192_030 Hb_009851_050 Hb_009851_050 Hb_002498_050--Hb_009851_050 Hb_000091_060 Hb_000091_060 Hb_002498_050--Hb_000091_060 Hb_000890_230 Hb_000890_230 Hb_002498_050--Hb_000890_230 Hb_005539_310 Hb_005539_310 Hb_001217_040--Hb_005539_310 Hb_000260_600 Hb_000260_600 Hb_001217_040--Hb_000260_600 Hb_000359_140 Hb_000359_140 Hb_001217_040--Hb_000359_140 Hb_000984_310 Hb_000984_310 Hb_001217_040--Hb_000984_310 Hb_000245_080 Hb_000245_080 Hb_001217_040--Hb_000245_080 Hb_001217_040--Hb_000890_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.3575 104.316 77.0169 354.799 103.231 108.075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1321 34.0686 23.7189 31.2847 15.6787

CAGE analysis