Hb_008055_030

Information

Type -
Description -
Location Contig8055: 35718-50139
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008055_030 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_005920_030 0.0771632433 - - putative polyprotein [Oryza sativa Japonica Group]
3 Hb_001856_280 0.1255969804 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
4 Hb_007885_110 0.1262347293 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]
5 Hb_043792_030 0.1307708889 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
6 Hb_019654_170 0.1356328715 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
7 Hb_004520_010 0.142014236 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
8 Hb_000346_050 0.1526392443 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
9 Hb_000644_020 0.1562786158 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
10 Hb_020831_070 0.1572538012 - - hypothetical protein VITISV_027174 [Vitis vinifera]
11 Hb_000567_270 0.1611354386 - - hypothetical protein L484_017162 [Morus notabilis]
12 Hb_006455_020 0.1616711229 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
13 Hb_001385_070 0.1617986578 - - hypothetical protein VITISV_019194 [Vitis vinifera]
14 Hb_003311_020 0.162082513 - - conserved hypothetical protein [Ricinus communis]
15 Hb_035651_010 0.1640655484 - - receptor-kinase, putative [Ricinus communis]
16 Hb_000803_230 0.1655076438 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_001793_040 0.1658087638 - - hypothetical protein VITISV_006810 [Vitis vinifera]
18 Hb_094002_010 0.1664303304 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
19 Hb_001383_080 0.1682063267 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
20 Hb_127552_050 0.1734865706 - - hypothetical protein VITISV_030752 [Vitis vinifera]

Gene co-expression network

sample Hb_008055_030 Hb_008055_030 Hb_005920_030 Hb_005920_030 Hb_008055_030--Hb_005920_030 Hb_001856_280 Hb_001856_280 Hb_008055_030--Hb_001856_280 Hb_007885_110 Hb_007885_110 Hb_008055_030--Hb_007885_110 Hb_043792_030 Hb_043792_030 Hb_008055_030--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_008055_030--Hb_019654_170 Hb_004520_010 Hb_004520_010 Hb_008055_030--Hb_004520_010 Hb_005920_030--Hb_001856_280 Hb_005920_030--Hb_043792_030 Hb_003311_020 Hb_003311_020 Hb_005920_030--Hb_003311_020 Hb_005920_030--Hb_019654_170 Hb_000567_270 Hb_000567_270 Hb_005920_030--Hb_000567_270 Hb_001856_280--Hb_043792_030 Hb_001856_280--Hb_019654_170 Hb_000346_050 Hb_000346_050 Hb_001856_280--Hb_000346_050 Hb_020831_070 Hb_020831_070 Hb_001856_280--Hb_020831_070 Hb_001880_020 Hb_001880_020 Hb_001856_280--Hb_001880_020 Hb_007885_110--Hb_005920_030 Hb_007885_110--Hb_004520_010 Hb_007885_110--Hb_001856_280 Hb_035651_010 Hb_035651_010 Hb_007885_110--Hb_035651_010 Hb_007885_110--Hb_019654_170 Hb_043792_030--Hb_000346_050 Hb_043792_030--Hb_019654_170 Hb_043792_030--Hb_020831_070 Hb_043792_030--Hb_003311_020 Hb_019654_170--Hb_000346_050 Hb_019654_170--Hb_003311_020 Hb_019654_170--Hb_020831_070 Hb_000820_100 Hb_000820_100 Hb_004520_010--Hb_000820_100 Hb_004520_010--Hb_035651_010 Hb_001385_070 Hb_001385_070 Hb_004520_010--Hb_001385_070 Hb_004520_010--Hb_005920_030 Hb_000123_340 Hb_000123_340 Hb_004520_010--Hb_000123_340 Hb_007543_020 Hb_007543_020 Hb_004520_010--Hb_007543_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0511547 0.0312128 0.0261252 0.00819679 0.0182766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.173363 0.579837

CAGE analysis