Hb_008055_040

Information

Type -
Description -
Location Contig8055: 41721-47848
Sequence    

Annotation

kegg
ID rcu:RCOM_1460830
description chromatin assembly factor I P60 subunit, putative
nr
ID XP_012079627.1
description PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14936 PE=4 SV=1
Gene Ontology
ID GO:0007275
description chromatin assembly factor 1 subunit fas2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59032: 42691-43101 , PASA_asmbl_59033: 45210-45788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008055_040 0.0 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
2 Hb_001405_120 0.0821986673 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
3 Hb_001575_100 0.0848712527 - - PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial [Jatropha curcas]
4 Hb_000365_120 0.0853296336 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
5 Hb_000174_110 0.0872304632 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
6 Hb_156973_010 0.0873737585 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002175_030 0.089520287 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
8 Hb_000109_090 0.0897253567 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
9 Hb_002043_190 0.0901401328 - - rwd domain-containing protein, putative [Ricinus communis]
10 Hb_002233_150 0.0902311276 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
11 Hb_003752_080 0.0918954201 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
12 Hb_001481_090 0.0944453847 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
13 Hb_002253_100 0.0944697254 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
14 Hb_006120_070 0.0963672162 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
15 Hb_000853_170 0.0967254469 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
16 Hb_000272_020 0.0982972951 - - oxidoreductase, putative [Ricinus communis]
17 Hb_003398_130 0.0984157625 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
18 Hb_005618_160 0.0989614336 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
19 Hb_000041_270 0.0997069914 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
20 Hb_001936_060 0.100319871 - - pyroglutamyl-peptidase I, putative [Ricinus communis]

Gene co-expression network

sample Hb_008055_040 Hb_008055_040 Hb_001405_120 Hb_001405_120 Hb_008055_040--Hb_001405_120 Hb_001575_100 Hb_001575_100 Hb_008055_040--Hb_001575_100 Hb_000365_120 Hb_000365_120 Hb_008055_040--Hb_000365_120 Hb_000174_110 Hb_000174_110 Hb_008055_040--Hb_000174_110 Hb_156973_010 Hb_156973_010 Hb_008055_040--Hb_156973_010 Hb_002175_030 Hb_002175_030 Hb_008055_040--Hb_002175_030 Hb_003467_010 Hb_003467_010 Hb_001405_120--Hb_003467_010 Hb_007632_110 Hb_007632_110 Hb_001405_120--Hb_007632_110 Hb_009222_010 Hb_009222_010 Hb_001405_120--Hb_009222_010 Hb_000189_340 Hb_000189_340 Hb_001405_120--Hb_000189_340 Hb_003849_060 Hb_003849_060 Hb_001405_120--Hb_003849_060 Hb_007026_030 Hb_007026_030 Hb_001575_100--Hb_007026_030 Hb_178968_100 Hb_178968_100 Hb_001575_100--Hb_178968_100 Hb_001014_050 Hb_001014_050 Hb_001575_100--Hb_001014_050 Hb_001575_100--Hb_000365_120 Hb_010661_030 Hb_010661_030 Hb_001575_100--Hb_010661_030 Hb_009421_020 Hb_009421_020 Hb_000365_120--Hb_009421_020 Hb_007632_030 Hb_007632_030 Hb_000365_120--Hb_007632_030 Hb_001390_110 Hb_001390_110 Hb_000365_120--Hb_001390_110 Hb_002141_030 Hb_002141_030 Hb_000365_120--Hb_002141_030 Hb_000365_120--Hb_156973_010 Hb_005697_060 Hb_005697_060 Hb_000365_120--Hb_005697_060 Hb_010068_040 Hb_010068_040 Hb_000174_110--Hb_010068_040 Hb_006620_020 Hb_006620_020 Hb_000174_110--Hb_006620_020 Hb_005618_160 Hb_005618_160 Hb_000174_110--Hb_005618_160 Hb_054865_100 Hb_054865_100 Hb_000174_110--Hb_054865_100 Hb_000174_110--Hb_002175_030 Hb_001486_340 Hb_001486_340 Hb_000174_110--Hb_001486_340 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_000853_230 Hb_000853_230 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_001433_070 Hb_001433_070 Hb_002175_030--Hb_001433_070 Hb_002175_030--Hb_000853_230 Hb_001089_110 Hb_001089_110 Hb_002175_030--Hb_001089_110 Hb_002175_030--Hb_010068_040 Hb_002175_030--Hb_006620_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.95517 2.49918 3.17083 2.05753 5.75415 5.00156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.01571 6.41066 1.93038 3.99669 2.464

CAGE analysis