Hb_008064_010

Information

Type -
Description -
Location Contig8064: 236-2404
Sequence    

Annotation

kegg
ID cic:CICLE_v10013817mg
description hypothetical protein
nr
ID XP_012066007.1
description PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID V4UV43
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013817mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin-like domain-containing ctd phosphatase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008064_010 0.0 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
2 Hb_000684_340 0.2046420487 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
3 Hb_033623_010 0.2424701663 - - -
4 Hb_006816_510 0.2440556914 - - Pectinesterase inhibitor, putative [Ricinus communis]
5 Hb_154471_010 0.2496192363 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
6 Hb_143863_010 0.2625677946 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
7 Hb_001565_120 0.263509844 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
8 Hb_011885_010 0.2670964254 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_001584_220 0.2674952919 - - galactinol synthase [Manihot esculenta]
10 Hb_070745_010 0.2720666585 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
11 Hb_000488_020 0.2723739729 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
12 Hb_050495_010 0.2763754286 - - heat-shock protein, putative [Ricinus communis]
13 Hb_007333_020 0.2776192169 - - -
14 Hb_167316_010 0.2778781725 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
15 Hb_002641_100 0.2807377092 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
16 Hb_000225_050 0.2837375254 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_004939_020 0.2850376389 - - gag/pol protein [Bryonia dioica]
18 Hb_000171_040 0.2865582162 - - -
19 Hb_004846_170 0.2891685606 - - heat-shock protein 70 [Hevea brasiliensis]
20 Hb_015388_030 0.2970565703 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_008064_010 Hb_008064_010 Hb_000684_340 Hb_000684_340 Hb_008064_010--Hb_000684_340 Hb_033623_010 Hb_033623_010 Hb_008064_010--Hb_033623_010 Hb_006816_510 Hb_006816_510 Hb_008064_010--Hb_006816_510 Hb_154471_010 Hb_154471_010 Hb_008064_010--Hb_154471_010 Hb_143863_010 Hb_143863_010 Hb_008064_010--Hb_143863_010 Hb_001565_120 Hb_001565_120 Hb_008064_010--Hb_001565_120 Hb_004846_170 Hb_004846_170 Hb_000684_340--Hb_004846_170 Hb_001269_560 Hb_001269_560 Hb_000684_340--Hb_001269_560 Hb_000684_340--Hb_033623_010 Hb_002928_070 Hb_002928_070 Hb_000684_340--Hb_002928_070 Hb_144951_010 Hb_144951_010 Hb_000684_340--Hb_144951_010 Hb_004108_010 Hb_004108_010 Hb_033623_010--Hb_004108_010 Hb_041177_010 Hb_041177_010 Hb_033623_010--Hb_041177_010 Hb_189237_010 Hb_189237_010 Hb_033623_010--Hb_189237_010 Hb_033623_010--Hb_144951_010 Hb_001081_040 Hb_001081_040 Hb_033623_010--Hb_001081_040 Hb_000171_040 Hb_000171_040 Hb_006816_510--Hb_000171_040 Hb_007333_020 Hb_007333_020 Hb_006816_510--Hb_007333_020 Hb_070745_010 Hb_070745_010 Hb_006816_510--Hb_070745_010 Hb_002641_100 Hb_002641_100 Hb_006816_510--Hb_002641_100 Hb_023024_010 Hb_023024_010 Hb_006816_510--Hb_023024_010 Hb_003849_260 Hb_003849_260 Hb_154471_010--Hb_003849_260 Hb_005656_140 Hb_005656_140 Hb_154471_010--Hb_005656_140 Hb_131956_010 Hb_131956_010 Hb_154471_010--Hb_131956_010 Hb_001584_220 Hb_001584_220 Hb_154471_010--Hb_001584_220 Hb_004800_190 Hb_004800_190 Hb_154471_010--Hb_004800_190 Hb_000359_110 Hb_000359_110 Hb_154471_010--Hb_000359_110 Hb_000960_010 Hb_000960_010 Hb_143863_010--Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_143863_010--Hb_136886_010 Hb_090459_010 Hb_090459_010 Hb_143863_010--Hb_090459_010 Hb_143863_010--Hb_001565_120 Hb_000488_020 Hb_000488_020 Hb_143863_010--Hb_000488_020 Hb_011885_010 Hb_011885_010 Hb_143863_010--Hb_011885_010 Hb_001565_120--Hb_090459_010 Hb_127819_010 Hb_127819_010 Hb_001565_120--Hb_127819_010 Hb_116685_010 Hb_116685_010 Hb_001565_120--Hb_116685_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_001565_120--Hb_000960_010 Hb_001565_120--Hb_011885_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.630579 3.74985 0.0726407 0 1.24727 0.347521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104072 0 0 0.100747 0

CAGE analysis