Hb_008066_010

Information

Type -
Description -
Location Contig8066: 5668-8319
Sequence    

Annotation

kegg
ID vvi:100244672
description translation initiation factor eIF-2B subunit alpha-like
nr
ID XP_012068802.1
description PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
swissprot
ID Q54I81
description Translation initiation factor eIF-2B subunit alpha OS=Dictyostelium discoideum GN=eif2b1 PE=3 SV=1
trembl
ID A0A067L811
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24634 PE=3 SV=1
Gene Ontology
ID GO:0003743
description translation initiation factor eif-2b subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59056: 5824-8410
cDNA
(Sanger)
(ID:Location)		 053_O16.ab1: 5869-7043

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008066_010 0.0 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
2 Hb_000110_160 0.0651071721 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001329_300 0.0730652545 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
4 Hb_000069_460 0.0796869974 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
5 Hb_010710_030 0.0802229771 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
6 Hb_000221_270 0.0818113383 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
7 Hb_000567_260 0.0818552183 - - BnaA09g41440D [Brassica napus]
8 Hb_000975_290 0.0837808973 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
9 Hb_000029_030 0.0847983609 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
10 Hb_011310_070 0.0848291623 - - ADP,ATP carrier protein, putative [Ricinus communis]
11 Hb_015001_020 0.0857415866 - - PREDICTED: la-related protein 6B [Jatropha curcas]
12 Hb_000051_110 0.0857493078 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000115_060 0.0859551321 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
14 Hb_001454_210 0.0879712275 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
15 Hb_001248_130 0.0892574444 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
16 Hb_009111_050 0.090009148 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
17 Hb_000190_140 0.0904707032 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
18 Hb_001604_010 0.0908018557 - - 14-3-3 protein, putative [Ricinus communis]
19 Hb_001691_210 0.091019847 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
20 Hb_183086_060 0.0917055176 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]

Gene co-expression network

sample Hb_008066_010 Hb_008066_010 Hb_000110_160 Hb_000110_160 Hb_008066_010--Hb_000110_160 Hb_001329_300 Hb_001329_300 Hb_008066_010--Hb_001329_300 Hb_000069_460 Hb_000069_460 Hb_008066_010--Hb_000069_460 Hb_010710_030 Hb_010710_030 Hb_008066_010--Hb_010710_030 Hb_000221_270 Hb_000221_270 Hb_008066_010--Hb_000221_270 Hb_000567_260 Hb_000567_260 Hb_008066_010--Hb_000567_260 Hb_000110_160--Hb_001329_300 Hb_011918_080 Hb_011918_080 Hb_000110_160--Hb_011918_080 Hb_001051_100 Hb_001051_100 Hb_000110_160--Hb_001051_100 Hb_000110_160--Hb_000567_260 Hb_178968_110 Hb_178968_110 Hb_000110_160--Hb_178968_110 Hb_001329_300--Hb_000567_260 Hb_002006_090 Hb_002006_090 Hb_001329_300--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001329_300--Hb_000614_230 Hb_008695_210 Hb_008695_210 Hb_001329_300--Hb_008695_210 Hb_000069_460--Hb_000221_270 Hb_000069_460--Hb_000110_160 Hb_000069_460--Hb_001329_300 Hb_000051_110 Hb_000051_110 Hb_000069_460--Hb_000051_110 Hb_000446_090 Hb_000446_090 Hb_000069_460--Hb_000446_090 Hb_000115_060 Hb_000115_060 Hb_010710_030--Hb_000115_060 Hb_004223_130 Hb_004223_130 Hb_010710_030--Hb_004223_130 Hb_002681_110 Hb_002681_110 Hb_010710_030--Hb_002681_110 Hb_000696_110 Hb_000696_110 Hb_010710_030--Hb_000696_110 Hb_001671_080 Hb_001671_080 Hb_010710_030--Hb_001671_080 Hb_005548_010 Hb_005548_010 Hb_000221_270--Hb_005548_010 Hb_002902_110 Hb_002902_110 Hb_000221_270--Hb_002902_110 Hb_000221_270--Hb_000051_110 Hb_000221_270--Hb_010710_030 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000567_260--Hb_000614_230 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.7993 12.4808 10.7108 13.8559 38.1127 61.5508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.691 44.964 78.4167 31.8731 11.5242

CAGE analysis