Hb_008066_040

Information

Type transcription factor
Description TF Family: M-type
Location Contig8066: 22047-22844
Sequence    

Annotation

kegg
ID rcu:RCOM_0234280
description mads box protein, putative
nr
ID XP_012069227.1
description PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
swissprot
ID Q4PSU4
description Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1
trembl
ID A0A067L964
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24638 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads box

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008066_040 0.0 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
2 Hb_005137_020 0.1085376193 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
3 Hb_001935_030 0.1087587985 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001268_080 0.1106485715 - - catalytic, putative [Ricinus communis]
5 Hb_078633_010 0.1141657182 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
6 Hb_072912_020 0.11531192 - - abhydrolase domain containing, putative [Ricinus communis]
7 Hb_002045_230 0.1171254105 - - Ammonium transporter 2 [Theobroma cacao]
8 Hb_000544_110 0.1172258108 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
9 Hb_004297_040 0.120851696 - - acyl CoA reductase [Hevea brasiliensis]
10 Hb_005615_070 0.1229836872 - - Rab7 [Hevea brasiliensis]
11 Hb_011245_020 0.1240752527 - - Ferrochelatase [Medicago truncatula]
12 Hb_000367_280 0.1246486018 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
13 Hb_001213_120 0.1248157917 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
14 Hb_002326_180 0.1263404773 - - Protein Z, putative [Ricinus communis]
15 Hb_006831_030 0.1292329604 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
16 Hb_001123_120 0.1336365325 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
17 Hb_005841_040 0.1346883946 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
18 Hb_001473_120 0.1353084845 - - Uncharacterized protein isoform 1 [Theobroma cacao]
19 Hb_000599_090 0.1380599495 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
20 Hb_001102_250 0.1398612131 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008066_040 Hb_008066_040 Hb_005137_020 Hb_005137_020 Hb_008066_040--Hb_005137_020 Hb_001935_030 Hb_001935_030 Hb_008066_040--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_008066_040--Hb_001268_080 Hb_078633_010 Hb_078633_010 Hb_008066_040--Hb_078633_010 Hb_072912_020 Hb_072912_020 Hb_008066_040--Hb_072912_020 Hb_002045_230 Hb_002045_230 Hb_008066_040--Hb_002045_230 Hb_000544_110 Hb_000544_110 Hb_005137_020--Hb_000544_110 Hb_005137_020--Hb_072912_020 Hb_005137_020--Hb_078633_010 Hb_005908_040 Hb_005908_040 Hb_005137_020--Hb_005908_040 Hb_001102_250 Hb_001102_250 Hb_005137_020--Hb_001102_250 Hb_004297_040 Hb_004297_040 Hb_005137_020--Hb_004297_040 Hb_006831_030 Hb_006831_030 Hb_001935_030--Hb_006831_030 Hb_001473_120 Hb_001473_120 Hb_001935_030--Hb_001473_120 Hb_001329_210 Hb_001329_210 Hb_001935_030--Hb_001329_210 Hb_001123_120 Hb_001123_120 Hb_001935_030--Hb_001123_120 Hb_002078_460 Hb_002078_460 Hb_001935_030--Hb_002078_460 Hb_000069_100 Hb_000069_100 Hb_001935_030--Hb_000069_100 Hb_000367_280 Hb_000367_280 Hb_001268_080--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_001268_080--Hb_001213_120 Hb_001268_080--Hb_078633_010 Hb_011245_020 Hb_011245_020 Hb_001268_080--Hb_011245_020 Hb_001268_080--Hb_006831_030 Hb_001268_080--Hb_004297_040 Hb_078633_010--Hb_072912_020 Hb_078633_010--Hb_001213_120 Hb_078633_010--Hb_000367_280 Hb_078633_010--Hb_000544_110 Hb_072912_020--Hb_000544_110 Hb_072912_020--Hb_001102_250 Hb_072912_020--Hb_004297_040 Hb_072912_020--Hb_001268_080 Hb_001052_030 Hb_001052_030 Hb_002045_230--Hb_001052_030 Hb_002326_180 Hb_002326_180 Hb_002045_230--Hb_002326_180 Hb_005841_040 Hb_005841_040 Hb_002045_230--Hb_005841_040 Hb_000035_440 Hb_000035_440 Hb_002045_230--Hb_000035_440 Hb_000352_140 Hb_000352_140 Hb_002045_230--Hb_000352_140 Hb_000175_130 Hb_000175_130 Hb_002045_230--Hb_000175_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6971 1.80495 0.631064 6.46674 8.42959 11.818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8292 52.6019 34.0848 3.94396 0.320542

CAGE analysis