Hb_008066_060

Information

Type -
Description -
Location Contig8066: 34669-37017
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16390g
description subtilase family protein
nr
ID XP_012068804.1
description PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
swissprot
ID O49607
description Subtilisin-like protease SBT1.6 OS=Arabidopsis thaliana GN=SBT1.6 PE=2 SV=1
trembl
ID B9N7H6
description Subtilase family protein OS=Populus trichocarpa GN=POPTR_0001s16390g PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008066_060 0.0 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
2 Hb_000139_500 0.1142424624 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
3 Hb_000653_010 0.1220598098 - - hypothetical protein CICLE_v10033238mg [Citrus clementina]
4 Hb_000723_240 0.1363927097 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
5 Hb_000836_480 0.1393565743 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_001545_270 0.1402162474 - - laccase, putative [Ricinus communis]
7 Hb_008418_010 0.1431216634 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
8 Hb_003160_050 0.1436408142 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_003097_200 0.1437883541 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006637_040 0.1441848846 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
11 Hb_000318_060 0.1454389325 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001922_010 0.1458472386 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
13 Hb_003768_100 0.1464650959 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
14 Hb_006618_080 0.1484120689 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
15 Hb_000911_050 0.1489830002 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
16 Hb_000393_030 0.1497422722 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000797_030 0.1514614033 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
18 Hb_000005_230 0.15206678 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
19 Hb_000032_560 0.1548201832 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
20 Hb_002597_010 0.1575705281 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]

Gene co-expression network

sample Hb_008066_060 Hb_008066_060 Hb_000139_500 Hb_000139_500 Hb_008066_060--Hb_000139_500 Hb_000653_010 Hb_000653_010 Hb_008066_060--Hb_000653_010 Hb_000723_240 Hb_000723_240 Hb_008066_060--Hb_000723_240 Hb_000836_480 Hb_000836_480 Hb_008066_060--Hb_000836_480 Hb_001545_270 Hb_001545_270 Hb_008066_060--Hb_001545_270 Hb_008418_010 Hb_008418_010 Hb_008066_060--Hb_008418_010 Hb_000318_060 Hb_000318_060 Hb_000139_500--Hb_000318_060 Hb_000393_030 Hb_000393_030 Hb_000139_500--Hb_000393_030 Hb_003913_060 Hb_003913_060 Hb_000139_500--Hb_003913_060 Hb_003160_050 Hb_003160_050 Hb_000139_500--Hb_003160_050 Hb_003398_090 Hb_003398_090 Hb_000139_500--Hb_003398_090 Hb_130563_010 Hb_130563_010 Hb_000653_010--Hb_130563_010 Hb_012753_190 Hb_012753_190 Hb_000653_010--Hb_012753_190 Hb_000653_010--Hb_000836_480 Hb_008226_020 Hb_008226_020 Hb_000653_010--Hb_008226_020 Hb_000138_020 Hb_000138_020 Hb_000653_010--Hb_000138_020 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_000723_240--Hb_007313_010 Hb_000723_240--Hb_008418_010 Hb_001922_010 Hb_001922_010 Hb_000723_240--Hb_001922_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_004310_170 Hb_004310_170 Hb_000836_480--Hb_004310_170 Hb_000836_480--Hb_003398_090 Hb_015978_010 Hb_015978_010 Hb_000836_480--Hb_015978_010 Hb_000836_480--Hb_001545_270 Hb_001545_270--Hb_001922_010 Hb_109673_010 Hb_109673_010 Hb_001545_270--Hb_109673_010 Hb_001218_070 Hb_001218_070 Hb_001545_270--Hb_001218_070 Hb_000911_050 Hb_000911_050 Hb_001545_270--Hb_000911_050 Hb_001545_270--Hb_000723_240 Hb_001545_270--Hb_008418_010 Hb_164283_010 Hb_164283_010 Hb_008418_010--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_008418_010--Hb_018591_010 Hb_006637_040 Hb_006637_040 Hb_008418_010--Hb_006637_040 Hb_008418_010--Hb_001922_010 Hb_003768_100 Hb_003768_100 Hb_008418_010--Hb_003768_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122187 1.04569 3.38399 8.64276 0.0795807 0.127359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0378164 0.119027 0.453211 20.3221 3.12635

CAGE analysis