Hb_008066_070

Information

Type transcription factor
Description TF Family: ERF
Location Contig8066: 43099-46534
Sequence    

Annotation

kegg
ID rcu:RCOM_0043760
description Ethylene-responsive transcription factor, putative
nr
ID AFY09702.1
description AP2/ERF super family protein [Hevea brasiliensis]
swissprot
ID Q9SSA8
description Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=1 SV=1
trembl
ID A0A0A6Z9S8
description AP2/ERF super family protein OS=Hevea brasiliensis GN=ERF3 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59060: 42941-46612 , PASA_asmbl_59062: 46082-46495
cDNA
(Sanger)
(ID:Location)		 026_O10.ab1: 42941-45428 , 028_I22.ab1: 42941-45432

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008066_070 0.0 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
2 Hb_020805_170 0.1050474997 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
3 Hb_011512_130 0.1221784429 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
4 Hb_000140_410 0.1230369522 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
5 Hb_000905_170 0.1382211154 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_007676_020 0.1473431659 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
7 Hb_000856_180 0.1544080779 - - calcium-dependent protein kinase [Hevea brasiliensis]
8 Hb_031862_040 0.1552207455 - - purine transporter, putative [Ricinus communis]
9 Hb_000049_090 0.1575129715 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
10 Hb_003071_020 0.1577641311 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
11 Hb_011930_070 0.1605559652 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
12 Hb_010407_170 0.1608772805 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
13 Hb_001268_120 0.1615362779 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002301_380 0.1616006712 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
15 Hb_007576_200 0.1620820612 - - amino acid transporter, putative [Ricinus communis]
16 Hb_004108_170 0.1622064768 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002700_080 0.1661045405 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
18 Hb_001288_070 0.1675076836 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
19 Hb_008511_100 0.1686313478 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
20 Hb_001433_140 0.1695725554 - - PREDICTED: phospholipase D p1 [Jatropha curcas]

Gene co-expression network

sample Hb_008066_070 Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_008066_070--Hb_020805_170 Hb_011512_130 Hb_011512_130 Hb_008066_070--Hb_011512_130 Hb_000140_410 Hb_000140_410 Hb_008066_070--Hb_000140_410 Hb_000905_170 Hb_000905_170 Hb_008066_070--Hb_000905_170 Hb_007676_020 Hb_007676_020 Hb_008066_070--Hb_007676_020 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180 Hb_020805_170--Hb_000140_410 Hb_001114_070 Hb_001114_070 Hb_020805_170--Hb_001114_070 Hb_000022_180 Hb_000022_180 Hb_020805_170--Hb_000022_180 Hb_005147_040 Hb_005147_040 Hb_020805_170--Hb_005147_040 Hb_020805_170--Hb_000905_170 Hb_005550_010 Hb_005550_010 Hb_011512_130--Hb_005550_010 Hb_002631_200 Hb_002631_200 Hb_011512_130--Hb_002631_200 Hb_002217_220 Hb_002217_220 Hb_011512_130--Hb_002217_220 Hb_005433_060 Hb_005433_060 Hb_011512_130--Hb_005433_060 Hb_008221_170 Hb_008221_170 Hb_011512_130--Hb_008221_170 Hb_001269_690 Hb_001269_690 Hb_000140_410--Hb_001269_690 Hb_000140_410--Hb_000905_170 Hb_001529_050 Hb_001529_050 Hb_000140_410--Hb_001529_050 Hb_003623_070 Hb_003623_070 Hb_000140_410--Hb_003623_070 Hb_000227_060 Hb_000227_060 Hb_000905_170--Hb_000227_060 Hb_049436_010 Hb_049436_010 Hb_000905_170--Hb_049436_010 Hb_000905_170--Hb_000856_180 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000009_330 Hb_000009_330 Hb_000905_170--Hb_000009_330 Hb_007676_020--Hb_001114_070 Hb_007676_020--Hb_020805_170 Hb_000084_220 Hb_000084_220 Hb_007676_020--Hb_000084_220 Hb_006573_300 Hb_006573_300 Hb_007676_020--Hb_006573_300 Hb_031862_040 Hb_031862_040 Hb_007676_020--Hb_031862_040 Hb_000856_180--Hb_003071_020 Hb_032808_030 Hb_032808_030 Hb_000856_180--Hb_032808_030 Hb_002046_020 Hb_002046_020 Hb_000856_180--Hb_002046_020 Hb_000236_410 Hb_000236_410 Hb_000856_180--Hb_000236_410 Hb_000856_180--Hb_000009_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
143.425 701.81 84.7837 232.466 96.1771 100.716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
152.156 134.819 224.966 507.675 49.8182

CAGE analysis