Hb_008071_020

Information

Type -
Description -
Location Contig8071: 6121-10946
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa005991mg
description hypothetical protein
nr
ID XP_012074870.1
description PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
swissprot
ID P51566
description Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2
trembl
ID A0A067KH66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09019 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase afc1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59065: 6033-6297 , PASA_asmbl_59066: 6309-10928 , PASA_asmbl_59067: 9500-9863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008071_020 0.0 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
2 Hb_001931_010 0.0493646043 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
3 Hb_001279_080 0.0590217294 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
4 Hb_028396_010 0.0629060585 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
5 Hb_026053_020 0.0629831833 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
6 Hb_006326_040 0.0629850953 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000045_310 0.0662834079 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
8 Hb_000261_160 0.0669299729 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
9 Hb_000189_240 0.0684653404 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
10 Hb_001341_150 0.0696500092 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
11 Hb_000566_120 0.0699437083 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
12 Hb_000676_390 0.0717082054 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
13 Hb_026889_030 0.072124233 - - protein with unknown function [Ricinus communis]
14 Hb_000805_240 0.0726017173 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
15 Hb_000826_100 0.0728963163 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
16 Hb_004889_020 0.0734108736 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
17 Hb_000457_180 0.0735718648 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
18 Hb_000571_020 0.073879289 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
19 Hb_017895_040 0.0759542965 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
20 Hb_000317_390 0.0771752338 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]

Gene co-expression network

sample Hb_008071_020 Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_001931_010--Hb_000566_120 Hb_001931_010--Hb_001279_080 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_001279_080--Hb_000045_310 Hb_001279_080--Hb_000566_120 Hb_028396_010--Hb_000045_310 Hb_028396_010--Hb_001341_150 Hb_028396_010--Hb_001931_010 Hb_000189_240 Hb_000189_240 Hb_028396_010--Hb_000189_240 Hb_028396_010--Hb_001279_080 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_026053_020--Hb_000189_240 Hb_000996_140 Hb_000996_140 Hb_026053_020--Hb_000996_140 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140 Hb_004889_020 Hb_004889_020 Hb_006326_040--Hb_004889_020 Hb_006326_040--Hb_000505_130 Hb_006326_040--Hb_000566_120 Hb_006326_040--Hb_028396_010 Hb_000045_310--Hb_000566_120 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_000045_310--Hb_001931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3385 6.61444 16.5078 18.8739 8.95326 9.15425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1939 31.7442 16.5203 9.37816 11.3053

CAGE analysis