Hb_008078_030

Information

Type -
Description -
Location Contig8078: 48237-50762
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008078_030 0.0 - - -
2 Hb_011161_070 0.1865018598 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X1 [Populus euphratica]
3 Hb_003029_080 0.1877954689 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
4 Hb_142522_010 0.1894271685 - - -
5 Hb_001811_040 0.1965406426 - - -
6 Hb_145761_010 0.1977228418 - - -
7 Hb_000221_100 0.2007249246 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
8 Hb_002498_180 0.2009173115 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
9 Hb_000376_160 0.2013076837 - - -
10 Hb_004048_140 0.2025236221 - - -
11 Hb_001623_330 0.2068887062 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
12 Hb_000183_070 0.2074495526 - - -
13 Hb_002784_040 0.2075008294 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
14 Hb_006452_190 0.2084427683 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
15 Hb_007017_060 0.2105187243 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
16 Hb_008578_010 0.2124290356 - - 30S ribosomal protein S19, putative [Ricinus communis]
17 Hb_171554_090 0.2126305808 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
18 Hb_044662_040 0.2132514175 - - -
19 Hb_003018_110 0.2140566903 - - -
20 Hb_007904_090 0.2144900622 - - PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera]

Gene co-expression network

sample Hb_008078_030 Hb_008078_030 Hb_011161_070 Hb_011161_070 Hb_008078_030--Hb_011161_070 Hb_003029_080 Hb_003029_080 Hb_008078_030--Hb_003029_080 Hb_142522_010 Hb_142522_010 Hb_008078_030--Hb_142522_010 Hb_001811_040 Hb_001811_040 Hb_008078_030--Hb_001811_040 Hb_145761_010 Hb_145761_010 Hb_008078_030--Hb_145761_010 Hb_000221_100 Hb_000221_100 Hb_008078_030--Hb_000221_100 Hb_086859_010 Hb_086859_010 Hb_011161_070--Hb_086859_010 Hb_011161_070--Hb_142522_010 Hb_171554_090 Hb_171554_090 Hb_011161_070--Hb_171554_090 Hb_004048_140 Hb_004048_140 Hb_011161_070--Hb_004048_140 Hb_003073_050 Hb_003073_050 Hb_011161_070--Hb_003073_050 Hb_002498_180 Hb_002498_180 Hb_003029_080--Hb_002498_180 Hb_001623_330 Hb_001623_330 Hb_003029_080--Hb_001623_330 Hb_003058_070 Hb_003058_070 Hb_003029_080--Hb_003058_070 Hb_000483_160 Hb_000483_160 Hb_003029_080--Hb_000483_160 Hb_003001_060 Hb_003001_060 Hb_003029_080--Hb_003001_060 Hb_001821_120 Hb_001821_120 Hb_003029_080--Hb_001821_120 Hb_142522_010--Hb_086859_010 Hb_029982_010 Hb_029982_010 Hb_142522_010--Hb_029982_010 Hb_001021_230 Hb_001021_230 Hb_142522_010--Hb_001021_230 Hb_015675_060 Hb_015675_060 Hb_142522_010--Hb_015675_060 Hb_004502_080 Hb_004502_080 Hb_142522_010--Hb_004502_080 Hb_017417_010 Hb_017417_010 Hb_001811_040--Hb_017417_010 Hb_001811_040--Hb_145761_010 Hb_000922_150 Hb_000922_150 Hb_001811_040--Hb_000922_150 Hb_001811_040--Hb_004048_140 Hb_000183_070 Hb_000183_070 Hb_001811_040--Hb_000183_070 Hb_145761_010--Hb_000221_100 Hb_000680_150 Hb_000680_150 Hb_145761_010--Hb_000680_150 Hb_003777_070 Hb_003777_070 Hb_145761_010--Hb_003777_070 Hb_002918_280 Hb_002918_280 Hb_145761_010--Hb_002918_280 Hb_000977_140 Hb_000977_140 Hb_145761_010--Hb_000977_140 Hb_145761_010--Hb_000183_070 Hb_000221_100--Hb_002918_280 Hb_007625_020 Hb_007625_020 Hb_000221_100--Hb_007625_020 Hb_007451_030 Hb_007451_030 Hb_000221_100--Hb_007451_030 Hb_000221_100--Hb_000977_140 Hb_000221_100--Hb_000680_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.767735 0.249415 0.110487 0.0682087 0.944416 0.494287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.664412 1.17518 0 0.0531725 0.128821

CAGE analysis