Hb_008080_040

Information

Type -
Description -
Location Contig8080: 92743-101841
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02030g
description POPTRDRAFT_775751; hypothetical protein
nr
ID KCW76444.1
description hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CDZ8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00834 PE=3 SV=1
Gene Ontology
ID GO:0009536
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59122: 83769-96939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008080_040 0.0 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
2 Hb_000327_300 0.0584161599 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
3 Hb_004586_080 0.0724746973 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
4 Hb_000407_110 0.0832119636 - - ripening-induced ACC oxidase [Carica papaya]
5 Hb_002965_020 0.0885134183 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
6 Hb_020902_020 0.1001792735 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
7 Hb_001357_260 0.1012051302 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_000976_020 0.1068094845 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
9 Hb_007875_070 0.1074443083 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
10 Hb_007483_030 0.1085846207 - - -
11 Hb_008225_080 0.1120872711 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
12 Hb_000411_060 0.1128239978 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
13 Hb_006919_010 0.1134100786 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
14 Hb_001168_010 0.1184077056 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
15 Hb_000758_030 0.1196673656 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
16 Hb_002917_010 0.1200687583 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
17 Hb_027288_010 0.1205251003 - - mutt domain protein, putative [Ricinus communis]
18 Hb_001609_080 0.1248036855 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
19 Hb_002048_010 0.1261699965 - - unknown [Lotus japonicus]
20 Hb_000245_140 0.1269130647 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]

Gene co-expression network

sample Hb_008080_040 Hb_008080_040 Hb_000327_300 Hb_000327_300 Hb_008080_040--Hb_000327_300 Hb_004586_080 Hb_004586_080 Hb_008080_040--Hb_004586_080 Hb_000407_110 Hb_000407_110 Hb_008080_040--Hb_000407_110 Hb_002965_020 Hb_002965_020 Hb_008080_040--Hb_002965_020 Hb_020902_020 Hb_020902_020 Hb_008080_040--Hb_020902_020 Hb_001357_260 Hb_001357_260 Hb_008080_040--Hb_001357_260 Hb_000327_300--Hb_004586_080 Hb_000327_300--Hb_002965_020 Hb_000327_300--Hb_000407_110 Hb_000327_300--Hb_001357_260 Hb_001168_010 Hb_001168_010 Hb_000327_300--Hb_001168_010 Hb_004586_080--Hb_001357_260 Hb_004586_080--Hb_000407_110 Hb_007483_030 Hb_007483_030 Hb_004586_080--Hb_007483_030 Hb_008705_070 Hb_008705_070 Hb_004586_080--Hb_008705_070 Hb_006919_010 Hb_006919_010 Hb_000407_110--Hb_006919_010 Hb_001609_080 Hb_001609_080 Hb_000407_110--Hb_001609_080 Hb_000407_110--Hb_007483_030 Hb_005653_100 Hb_005653_100 Hb_000407_110--Hb_005653_100 Hb_000245_140 Hb_000245_140 Hb_002965_020--Hb_000245_140 Hb_002048_010 Hb_002048_010 Hb_002965_020--Hb_002048_010 Hb_000976_020 Hb_000976_020 Hb_002965_020--Hb_000976_020 Hb_002965_020--Hb_001357_260 Hb_002917_010 Hb_002917_010 Hb_002965_020--Hb_002917_010 Hb_001775_050 Hb_001775_050 Hb_020902_020--Hb_001775_050 Hb_020902_020--Hb_001609_080 Hb_020902_020--Hb_005653_100 Hb_020902_020--Hb_000407_110 Hb_001454_300 Hb_001454_300 Hb_020902_020--Hb_001454_300 Hb_112082_030 Hb_112082_030 Hb_001357_260--Hb_112082_030 Hb_001357_260--Hb_002917_010 Hb_001357_260--Hb_000976_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.60615 1.53447 0.493308 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 14.4837 0.349627

CAGE analysis