Hb_008080_050

Information

Type -
Description -
Location Contig8080: 112753-114411
Sequence    

Annotation

kegg
ID rcu:RCOM_1494390
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_002516045.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID P17801
description Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2
trembl
ID B9RQM6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494390 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008080_050 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_114025_010 0.0605371725 - - hypothetical protein POPTR_0008s13520g [Populus trichocarpa]
3 Hb_001856_060 0.0864352765 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_001675_230 0.1000267458 - - scab resistance family protein [Populus trichocarpa]
5 Hb_000411_060 0.131982379 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_002542_090 0.1389466006 - - Potassium transporter, putative [Ricinus communis]
7 Hb_001013_040 0.1433352559 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
8 Hb_011282_070 0.1469807528 - - ATP binding protein, putative [Ricinus communis]
9 Hb_009486_100 0.1483746841 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_002435_080 0.1488648141 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002928_220 0.1489678754 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
12 Hb_021419_060 0.1492596791 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
13 Hb_000575_110 0.1493993255 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
14 Hb_004463_040 0.1520980996 - - -
15 Hb_000422_020 0.1536610862 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
16 Hb_006120_020 0.1573440525 - - -
17 Hb_020902_020 0.158511832 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
18 Hb_110218_010 0.1591237868 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
19 Hb_000291_320 0.1602198199 - - Protein MLO, putative [Ricinus communis]
20 Hb_001454_300 0.1616606091 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008080_050 Hb_008080_050 Hb_114025_010 Hb_114025_010 Hb_008080_050--Hb_114025_010 Hb_001856_060 Hb_001856_060 Hb_008080_050--Hb_001856_060 Hb_001675_230 Hb_001675_230 Hb_008080_050--Hb_001675_230 Hb_000411_060 Hb_000411_060 Hb_008080_050--Hb_000411_060 Hb_002542_090 Hb_002542_090 Hb_008080_050--Hb_002542_090 Hb_001013_040 Hb_001013_040 Hb_008080_050--Hb_001013_040 Hb_114025_010--Hb_001856_060 Hb_114025_010--Hb_001675_230 Hb_006120_020 Hb_006120_020 Hb_114025_010--Hb_006120_020 Hb_002435_080 Hb_002435_080 Hb_114025_010--Hb_002435_080 Hb_000291_320 Hb_000291_320 Hb_114025_010--Hb_000291_320 Hb_001856_060--Hb_001013_040 Hb_001856_060--Hb_002435_080 Hb_001331_040 Hb_001331_040 Hb_001856_060--Hb_001331_040 Hb_001856_060--Hb_000411_060 Hb_001675_230--Hb_006120_020 Hb_011282_070 Hb_011282_070 Hb_001675_230--Hb_011282_070 Hb_000422_020 Hb_000422_020 Hb_001675_230--Hb_000422_020 Hb_000575_110 Hb_000575_110 Hb_001675_230--Hb_000575_110 Hb_009012_020 Hb_009012_020 Hb_000411_060--Hb_009012_020 Hb_000487_170 Hb_000487_170 Hb_000411_060--Hb_000487_170 Hb_001902_180 Hb_001902_180 Hb_000411_060--Hb_001902_180 Hb_000101_050 Hb_000101_050 Hb_000411_060--Hb_000101_050 Hb_008080_040 Hb_008080_040 Hb_000411_060--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_000411_060--Hb_001357_260 Hb_006938_010 Hb_006938_010 Hb_002542_090--Hb_006938_010 Hb_005010_040 Hb_005010_040 Hb_002542_090--Hb_005010_040 Hb_002928_220 Hb_002928_220 Hb_002542_090--Hb_002928_220 Hb_002542_090--Hb_001331_040 Hb_000010_200 Hb_000010_200 Hb_002542_090--Hb_000010_200 Hb_002542_090--Hb_001856_060 Hb_000381_030 Hb_000381_030 Hb_001013_040--Hb_000381_030 Hb_007875_070 Hb_007875_070 Hb_001013_040--Hb_007875_070 Hb_001013_040--Hb_001331_040 Hb_012019_020 Hb_012019_020 Hb_001013_040--Hb_012019_020 Hb_002171_070 Hb_002171_070 Hb_001013_040--Hb_002171_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.85699 1.49132 0.127018 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 14.0116 1.9668

CAGE analysis