Hb_008085_010

Information

Type -
Description -
Location Contig8085: 6380-8002
Sequence    

Annotation

kegg
ID rcu:RCOM_0347890
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012081456.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
swissprot
ID Q9SZ10
description Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1
trembl
ID B9SW54
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0347890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59125: 4894-6498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008085_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
2 Hb_007163_090 0.076886567 - - PREDICTED: protein spt2-like [Jatropha curcas]
3 Hb_000803_190 0.0771262162 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
4 Hb_004837_040 0.0790357759 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
5 Hb_001437_180 0.0816522817 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
6 Hb_004734_060 0.0840784634 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
7 Hb_001663_030 0.0857220686 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
8 Hb_000062_240 0.0858095695 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
9 Hb_004447_060 0.090187939 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
10 Hb_000184_130 0.0914648815 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
11 Hb_006332_010 0.091510032 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
12 Hb_000953_010 0.0915795325 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
13 Hb_039946_020 0.091733287 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002163_030 0.0928522669 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
15 Hb_003766_040 0.0928856003 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000629_010 0.0933301783 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
17 Hb_001226_030 0.0939937851 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
18 Hb_003994_240 0.0943760072 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
19 Hb_000032_290 0.0948184251 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
20 Hb_020000_020 0.0953936999 - - Troponin C, skeletal muscle, putative [Ricinus communis]

Gene co-expression network

sample Hb_008085_010 Hb_008085_010 Hb_007163_090 Hb_007163_090 Hb_008085_010--Hb_007163_090 Hb_000803_190 Hb_000803_190 Hb_008085_010--Hb_000803_190 Hb_004837_040 Hb_004837_040 Hb_008085_010--Hb_004837_040 Hb_001437_180 Hb_001437_180 Hb_008085_010--Hb_001437_180 Hb_004734_060 Hb_004734_060 Hb_008085_010--Hb_004734_060 Hb_001663_030 Hb_001663_030 Hb_008085_010--Hb_001663_030 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050 Hb_000803_190--Hb_004734_060 Hb_033152_080 Hb_033152_080 Hb_000803_190--Hb_033152_080 Hb_000953_010 Hb_000953_010 Hb_000803_190--Hb_000953_010 Hb_000803_190--Hb_001797_050 Hb_005188_050 Hb_005188_050 Hb_000803_190--Hb_005188_050 Hb_000803_190--Hb_000207_390 Hb_000062_240 Hb_000062_240 Hb_004837_040--Hb_000062_240 Hb_000000_370 Hb_000000_370 Hb_004837_040--Hb_000000_370 Hb_002496_030 Hb_002496_030 Hb_004837_040--Hb_002496_030 Hb_000203_160 Hb_000203_160 Hb_004837_040--Hb_000203_160 Hb_000629_010 Hb_000629_010 Hb_004837_040--Hb_000629_010 Hb_175338_030 Hb_175338_030 Hb_004837_040--Hb_175338_030 Hb_002636_050 Hb_002636_050 Hb_001437_180--Hb_002636_050 Hb_001437_180--Hb_004734_060 Hb_001771_130 Hb_001771_130 Hb_001437_180--Hb_001771_130 Hb_000386_030 Hb_000386_030 Hb_001437_180--Hb_000386_030 Hb_004602_040 Hb_004602_040 Hb_001437_180--Hb_004602_040 Hb_004734_060--Hb_033152_080 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_001516_100 Hb_001516_100 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_001663_030--Hb_000577_010 Hb_003994_240 Hb_003994_240 Hb_001663_030--Hb_003994_240 Hb_001663_030--Hb_007163_090 Hb_000802_080 Hb_000802_080 Hb_001663_030--Hb_000802_080 Hb_001789_090 Hb_001789_090 Hb_001663_030--Hb_001789_090 Hb_000260_220 Hb_000260_220 Hb_001663_030--Hb_000260_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.91564 3.06711 1.18626 1.45955 2.39295 6.05024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.73938 2.69404 3.6802 2.65876 1.03653

CAGE analysis