Hb_008085_040

Information

Type -
Description -
Location Contig8085: 76220-80351
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G080600g
description hypothetical protein
nr
ID KHN39270.1
description Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
swissprot
ID Q9FMU2
description Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2
trembl
ID A0A0B2S200
description Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=glysoja_018042 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59129: 79642-79880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008085_040 0.0 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
2 Hb_001959_160 0.0953552034 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
3 Hb_007229_060 0.0976286636 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
4 Hb_000223_150 0.1018218623 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
5 Hb_000156_100 0.1024469502 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
6 Hb_001396_230 0.1027184249 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
7 Hb_000861_040 0.1057240712 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
8 Hb_002794_030 0.105790038 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
9 Hb_003943_030 0.1070400171 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
10 Hb_000983_100 0.1074020747 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
11 Hb_000836_070 0.1088508648 - - protein binding protein, putative [Ricinus communis]
12 Hb_183612_100 0.1091131435 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
13 Hb_006846_110 0.1107377814 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
14 Hb_003408_030 0.1130110635 - - PREDICTED: protein YIF1B [Jatropha curcas]
15 Hb_001981_090 0.1157638617 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
16 Hb_010710_040 0.116120311 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002307_090 0.1176457683 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
18 Hb_000059_220 0.1225446327 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
19 Hb_003018_190 0.1225971144 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
20 Hb_152439_020 0.1226236524 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008085_040 Hb_008085_040 Hb_001959_160 Hb_001959_160 Hb_008085_040--Hb_001959_160 Hb_007229_060 Hb_007229_060 Hb_008085_040--Hb_007229_060 Hb_000223_150 Hb_000223_150 Hb_008085_040--Hb_000223_150 Hb_000156_100 Hb_000156_100 Hb_008085_040--Hb_000156_100 Hb_001396_230 Hb_001396_230 Hb_008085_040--Hb_001396_230 Hb_000861_040 Hb_000861_040 Hb_008085_040--Hb_000861_040 Hb_003943_030 Hb_003943_030 Hb_001959_160--Hb_003943_030 Hb_002290_040 Hb_002290_040 Hb_001959_160--Hb_002290_040 Hb_001153_220 Hb_001153_220 Hb_001959_160--Hb_001153_220 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110 Hb_000983_100 Hb_000983_100 Hb_007229_060--Hb_000983_100 Hb_002307_090 Hb_002307_090 Hb_007229_060--Hb_002307_090 Hb_007229_060--Hb_000861_040 Hb_002326_030 Hb_002326_030 Hb_007229_060--Hb_002326_030 Hb_002794_030 Hb_002794_030 Hb_007229_060--Hb_002794_030 Hb_001981_090 Hb_001981_090 Hb_007229_060--Hb_001981_090 Hb_005488_010 Hb_005488_010 Hb_000223_150--Hb_005488_010 Hb_008289_060 Hb_008289_060 Hb_000223_150--Hb_008289_060 Hb_000223_150--Hb_006846_110 Hb_004951_040 Hb_004951_040 Hb_000223_150--Hb_004951_040 Hb_005532_060 Hb_005532_060 Hb_000223_150--Hb_005532_060 Hb_131864_040 Hb_131864_040 Hb_000223_150--Hb_131864_040 Hb_000836_080 Hb_000836_080 Hb_000156_100--Hb_000836_080 Hb_010710_040 Hb_010710_040 Hb_000156_100--Hb_010710_040 Hb_000156_100--Hb_002794_030 Hb_000156_100--Hb_000983_100 Hb_000836_070 Hb_000836_070 Hb_000156_100--Hb_000836_070 Hb_000156_100--Hb_007229_060 Hb_005779_100 Hb_005779_100 Hb_001396_230--Hb_005779_100 Hb_024952_010 Hb_024952_010 Hb_001396_230--Hb_024952_010 Hb_002739_110 Hb_002739_110 Hb_001396_230--Hb_002739_110 Hb_001606_070 Hb_001606_070 Hb_001396_230--Hb_001606_070 Hb_003030_080 Hb_003030_080 Hb_001396_230--Hb_003030_080 Hb_003408_030 Hb_003408_030 Hb_000861_040--Hb_003408_030 Hb_000861_040--Hb_002326_030 Hb_002527_070 Hb_002527_070 Hb_000861_040--Hb_002527_070 Hb_026988_020 Hb_026988_020 Hb_000861_040--Hb_026988_020 Hb_000861_040--Hb_000983_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05691 0.256629 0.106689 0.0573148 0.673221 1.16952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02904 1.36475 2.26429 0.38752 0.193981

CAGE analysis