Hb_008092_020

Information

Type -
Description -
Location Contig8092: 20850-24221
Sequence    

Annotation

kegg
ID rcu:RCOM_1051610
description transcription factor, putative
nr
ID XP_002514268.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q8S3D1
description Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2
trembl
ID B9RKM4
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1051610 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59179: 20791-24249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008092_020 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_003835_030 0.0665084639 - - glycosyltransferase, partial [Arabidopsis thaliana]
3 Hb_174101_010 0.0767982163 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_001013_050 0.0858240165 - - unnamed protein product [Coffea canephora]
5 Hb_000028_460 0.0891018893 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
6 Hb_002000_130 0.0905375133 - - PREDICTED: abscisic stress-ripening protein 2-like [Eucalyptus grandis]
7 Hb_000472_020 0.0925614963 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
8 Hb_005034_010 0.0983722579 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_003226_030 0.1014203879 - - sucrose synthase 5 [Hevea brasiliensis]
10 Hb_001143_140 0.1023130033 - - Aldehyde dehydrogenase, putative [Ricinus communis]
11 Hb_005784_020 0.1028559025 - - Protein MKS1, putative [Ricinus communis]
12 Hb_012743_020 0.1089751242 - - serine/threonine protein phosphatase, putative [Ricinus communis]
13 Hb_000589_240 0.111787886 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_002431_090 0.1121559215 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001544_070 0.1126041072 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
16 Hb_000614_190 0.1146062987 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
17 Hb_001174_030 0.1150039436 - - unnamed protein product [Vitis vinifera]
18 Hb_002477_080 0.1154482597 - - hypothetical protein RCOM_0653450 [Ricinus communis]
19 Hb_000589_330 0.1174118969 - - kinase, putative [Ricinus communis]
20 Hb_002010_070 0.120382837 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_008092_020 Hb_008092_020 Hb_003835_030 Hb_003835_030 Hb_008092_020--Hb_003835_030 Hb_174101_010 Hb_174101_010 Hb_008092_020--Hb_174101_010 Hb_001013_050 Hb_001013_050 Hb_008092_020--Hb_001013_050 Hb_000028_460 Hb_000028_460 Hb_008092_020--Hb_000028_460 Hb_002000_130 Hb_002000_130 Hb_008092_020--Hb_002000_130 Hb_000472_020 Hb_000472_020 Hb_008092_020--Hb_000472_020 Hb_003835_030--Hb_001013_050 Hb_003835_030--Hb_002000_130 Hb_000589_330 Hb_000589_330 Hb_003835_030--Hb_000589_330 Hb_005034_010 Hb_005034_010 Hb_003835_030--Hb_005034_010 Hb_003835_030--Hb_000472_020 Hb_001544_070 Hb_001544_070 Hb_174101_010--Hb_001544_070 Hb_004166_020 Hb_004166_020 Hb_174101_010--Hb_004166_020 Hb_001174_030 Hb_001174_030 Hb_174101_010--Hb_001174_030 Hb_174101_010--Hb_000472_020 Hb_174101_010--Hb_005034_010 Hb_001013_050--Hb_000589_330 Hb_001013_050--Hb_000472_020 Hb_000613_250 Hb_000613_250 Hb_001013_050--Hb_000613_250 Hb_002097_130 Hb_002097_130 Hb_001013_050--Hb_002097_130 Hb_000497_100 Hb_000497_100 Hb_000028_460--Hb_000497_100 Hb_038777_010 Hb_038777_010 Hb_000028_460--Hb_038777_010 Hb_005357_020 Hb_005357_020 Hb_000028_460--Hb_005357_020 Hb_000028_460--Hb_002000_130 Hb_012743_020 Hb_012743_020 Hb_000028_460--Hb_012743_020 Hb_003226_030 Hb_003226_030 Hb_002000_130--Hb_003226_030 Hb_001143_140 Hb_001143_140 Hb_002000_130--Hb_001143_140 Hb_000614_190 Hb_000614_190 Hb_002000_130--Hb_000614_190 Hb_000472_020--Hb_001544_070 Hb_000472_020--Hb_000613_250 Hb_000472_020--Hb_001174_030 Hb_144703_010 Hb_144703_010 Hb_000472_020--Hb_144703_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.189001 51.1234 17.7166 52.1884 0.341251 0.528834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0942659 0.0247204 0 28.7952 29.5752

CAGE analysis