Hb_008092_050

Information

Type -
Description -
Location Contig8092: 62106-69377
Sequence    

Annotation

kegg
ID pmum:103340883
description uncharacterized LOC103340883
nr
ID XP_011048367.1
description PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
swissprot
ID B7K735
description Elongation factor Ts OS=Cyanothece sp. (strain PCC 7424) GN=tsf PE=3 SV=1
trembl
ID A0A067KFH6
description Elongation factor Ts OS=Jatropha curcas GN=JCGZ_07279 PE=3 SV=1
Gene Ontology
ID GO:0009570
description titin-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008092_050 0.0 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
2 Hb_001408_030 0.0760824788 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
3 Hb_008092_060 0.0920001949 - - -
4 Hb_005618_150 0.1049090174 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
5 Hb_001307_040 0.1106282718 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
6 Hb_001437_120 0.1142820318 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
7 Hb_006911_070 0.1153499608 - - 50S ribosomal protein L1p, putative [Ricinus communis]
8 Hb_005271_160 0.1205472218 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
9 Hb_003929_220 0.1208455231 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_003900_030 0.1259620958 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
11 Hb_004254_100 0.1281466689 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
12 Hb_164926_010 0.1293949217 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
13 Hb_007192_090 0.1321139456 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
14 Hb_000031_230 0.1361943223 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
15 Hb_002942_130 0.1364860156 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
16 Hb_000260_710 0.136743713 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
17 Hb_000997_100 0.1377619708 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
18 Hb_002016_010 0.1418360525 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
19 Hb_001396_240 0.142206935 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
20 Hb_000363_060 0.1423108576 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_008092_050 Hb_008092_050 Hb_001408_030 Hb_001408_030 Hb_008092_050--Hb_001408_030 Hb_008092_060 Hb_008092_060 Hb_008092_050--Hb_008092_060 Hb_005618_150 Hb_005618_150 Hb_008092_050--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_008092_050--Hb_001307_040 Hb_001437_120 Hb_001437_120 Hb_008092_050--Hb_001437_120 Hb_006911_070 Hb_006911_070 Hb_008092_050--Hb_006911_070 Hb_001408_030--Hb_008092_060 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240 Hb_008092_060--Hb_001437_120 Hb_000031_230 Hb_000031_230 Hb_008092_060--Hb_000031_230 Hb_007192_090 Hb_007192_090 Hb_008092_060--Hb_007192_090 Hb_002276_070 Hb_002276_070 Hb_008092_060--Hb_002276_070 Hb_001907_070 Hb_001907_070 Hb_005618_150--Hb_001907_070 Hb_164926_010 Hb_164926_010 Hb_005618_150--Hb_164926_010 Hb_001723_030 Hb_001723_030 Hb_005618_150--Hb_001723_030 Hb_006062_030 Hb_006062_030 Hb_005618_150--Hb_006062_030 Hb_004871_010 Hb_004871_010 Hb_005618_150--Hb_004871_010 Hb_001307_040--Hb_008092_060 Hb_005271_160 Hb_005271_160 Hb_001307_040--Hb_005271_160 Hb_001307_040--Hb_001408_030 Hb_003900_030 Hb_003900_030 Hb_001307_040--Hb_003900_030 Hb_000395_090 Hb_000395_090 Hb_001307_040--Hb_000395_090 Hb_028707_110 Hb_028707_110 Hb_001437_120--Hb_028707_110 Hb_001437_120--Hb_002276_070 Hb_000997_140 Hb_000997_140 Hb_001437_120--Hb_000997_140 Hb_001437_120--Hb_003929_220 Hb_006911_070--Hb_001907_070 Hb_000260_710 Hb_000260_710 Hb_006911_070--Hb_000260_710 Hb_001959_240 Hb_001959_240 Hb_006911_070--Hb_001959_240 Hb_031042_060 Hb_031042_060 Hb_006911_070--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_006911_070--Hb_000302_190 Hb_006911_070--Hb_005618_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5672 36.229 68.4181 26.8875 34.262 36.2667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.01375 5.62396 7.12501 14.2921 127.511

CAGE analysis