Hb_008092_060

Information

Type -
Description -
Location Contig8092: 64039-64745
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008092_060 0.0 - - -
2 Hb_001408_030 0.076884269 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
3 Hb_008092_050 0.0920001949 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
4 Hb_001437_120 0.1051481895 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
5 Hb_000031_230 0.1198707646 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
6 Hb_007192_090 0.1278316585 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
7 Hb_002276_070 0.1296698034 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
8 Hb_003900_030 0.1303779186 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41720 isoform X1 [Jatropha curcas]
9 Hb_002740_190 0.1317150303 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
10 Hb_001307_040 0.1335076187 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
11 Hb_000479_170 0.1338548231 - - chaperone clpb, putative [Ricinus communis]
12 Hb_004254_100 0.1353036697 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
13 Hb_028707_110 0.1367593983 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
14 Hb_002942_130 0.1378294452 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
15 Hb_004785_070 0.1384955203 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
16 Hb_001396_240 0.1401554562 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
17 Hb_002495_060 0.140801847 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_002636_040 0.1437137619 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
19 Hb_004466_050 0.1445750646 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
20 Hb_007769_040 0.1446888332 - - PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_008092_060 Hb_008092_060 Hb_001408_030 Hb_001408_030 Hb_008092_060--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_008092_060--Hb_008092_050 Hb_001437_120 Hb_001437_120 Hb_008092_060--Hb_001437_120 Hb_000031_230 Hb_000031_230 Hb_008092_060--Hb_000031_230 Hb_007192_090 Hb_007192_090 Hb_008092_060--Hb_007192_090 Hb_002276_070 Hb_002276_070 Hb_008092_060--Hb_002276_070 Hb_001408_030--Hb_008092_050 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001396_240 Hb_001396_240 Hb_001408_030--Hb_001396_240 Hb_005618_150 Hb_005618_150 Hb_008092_050--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_008092_050--Hb_001307_040 Hb_008092_050--Hb_001437_120 Hb_006911_070 Hb_006911_070 Hb_008092_050--Hb_006911_070 Hb_028707_110 Hb_028707_110 Hb_001437_120--Hb_028707_110 Hb_001437_120--Hb_002276_070 Hb_000997_140 Hb_000997_140 Hb_001437_120--Hb_000997_140 Hb_001437_120--Hb_003929_220 Hb_003053_050 Hb_003053_050 Hb_000031_230--Hb_003053_050 Hb_000997_100 Hb_000997_100 Hb_000031_230--Hb_000997_100 Hb_000031_230--Hb_007192_090 Hb_001250_020 Hb_001250_020 Hb_000031_230--Hb_001250_020 Hb_000031_230--Hb_001408_030 Hb_001472_160 Hb_001472_160 Hb_007192_090--Hb_001472_160 Hb_001828_120 Hb_001828_120 Hb_007192_090--Hb_001828_120 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_025477_050 Hb_025477_050 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_002495_060 Hb_002495_060 Hb_002276_070--Hb_002495_060 Hb_002368_070 Hb_002368_070 Hb_002276_070--Hb_002368_070 Hb_002276_070--Hb_028707_110 Hb_004785_070 Hb_004785_070 Hb_002276_070--Hb_004785_070 Hb_010488_010 Hb_010488_010 Hb_002276_070--Hb_010488_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.692 58.4017 71.1316 39.811 49.9482 78.6119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9042 9.51337 8.51424 27.5589 191.669

CAGE analysis