Hb_008092_080

Information

Type -
Description -
Location Contig8092: 79264-84486
Sequence    

Annotation

kegg
ID rcu:RCOM_1051260
description elongation factor ts, putative
nr
ID XP_002514263.1
description elongation factor ts, putative [Ricinus communis]
swissprot
ID Q45388
description Protein tex OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=tex PE=3 SV=2
trembl
ID B9RKL9
description Elongation factor Ts OS=Ricinus communis GN=RCOM_1051260 PE=3 SV=1
Gene Ontology
ID GO:0009570
description elongation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59185: 83349-86189
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008092_080 0.0 - - elongation factor ts, putative [Ricinus communis]
2 Hb_090530_010 0.1257506346 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_024714_080 0.1306472315 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
4 Hb_003077_130 0.1491115308 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
5 Hb_002681_080 0.1595241702 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
6 Hb_000069_490 0.1743295103 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003427_080 0.1748963427 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
8 Hb_007313_060 0.1769954251 - - PREDICTED: paramyosin [Jatropha curcas]
9 Hb_004785_070 0.1788272944 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
10 Hb_008123_010 0.1800244324 - - -
11 Hb_000053_120 0.1831859013 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
12 Hb_028707_110 0.1836605249 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
13 Hb_002740_190 0.1841787451 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
14 Hb_078477_060 0.1871498949 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
15 Hb_003878_080 0.1897618086 - - PREDICTED: uncharacterized protein LOC105637045 [Jatropha curcas]
16 Hb_000395_090 0.1923872162 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
17 Hb_005523_010 0.1973621091 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
18 Hb_010757_030 0.1991778308 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000599_230 0.1993407071 - - -
20 Hb_002276_070 0.1995971401 - - PREDICTED: heat shock protein 83 [Jatropha curcas]

Gene co-expression network

sample Hb_008092_080 Hb_008092_080 Hb_090530_010 Hb_090530_010 Hb_008092_080--Hb_090530_010 Hb_024714_080 Hb_024714_080 Hb_008092_080--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_008092_080--Hb_003077_130 Hb_002681_080 Hb_002681_080 Hb_008092_080--Hb_002681_080 Hb_000069_490 Hb_000069_490 Hb_008092_080--Hb_000069_490 Hb_003427_080 Hb_003427_080 Hb_008092_080--Hb_003427_080 Hb_002740_190 Hb_002740_190 Hb_090530_010--Hb_002740_190 Hb_090530_010--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_090530_010--Hb_028707_110 Hb_008123_010 Hb_008123_010 Hb_090530_010--Hb_008123_010 Hb_090530_010--Hb_003077_130 Hb_024714_080--Hb_003077_130 Hb_024714_080--Hb_000069_490 Hb_004785_070 Hb_004785_070 Hb_024714_080--Hb_004785_070 Hb_003878_080 Hb_003878_080 Hb_024714_080--Hb_003878_080 Hb_024714_080--Hb_028707_110 Hb_000997_140 Hb_000997_140 Hb_024714_080--Hb_000997_140 Hb_003077_130--Hb_000069_490 Hb_003077_130--Hb_000997_140 Hb_003077_130--Hb_004785_070 Hb_003077_130--Hb_028707_110 Hb_010757_030 Hb_010757_030 Hb_003077_130--Hb_010757_030 Hb_000521_090 Hb_000521_090 Hb_002681_080--Hb_000521_090 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_000599_230 Hb_000599_230 Hb_002681_080--Hb_000599_230 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220 Hb_000069_490--Hb_003878_080 Hb_000069_490--Hb_028707_110 Hb_000069_490--Hb_010757_030 Hb_000069_490--Hb_000997_140 Hb_000402_170 Hb_000402_170 Hb_003427_080--Hb_000402_170 Hb_000053_120 Hb_000053_120 Hb_003427_080--Hb_000053_120 Hb_000038_020 Hb_000038_020 Hb_003427_080--Hb_000038_020 Hb_000667_140 Hb_000667_140 Hb_003427_080--Hb_000667_140 Hb_003427_080--Hb_003077_130 Hb_166127_030 Hb_166127_030 Hb_003427_080--Hb_166127_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8312 13.5165 13.0973 15.2453 15.8671 34.6237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.36912 2.76948 8.21324 16.8238 155.678

CAGE analysis